Reactome | XylS-SDC1 [Golgi lumen]

XylS-SDC1 [Golgi lumen]

Stable Identifier

R-HSA-2064146

Type

Protein [EntityWithAccessionedSequence]

Species

Homo sapiens

Compartment

Golgi lumen

Synonyms

xylosyl-SDC1, syndecan 1

Locations in the PathwayBrowser

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External Reference Information

External Reference

UniProt:P18827 SDC1

Gene Names

SDC1, SDC

Chain

signal peptide:1-22, chain:23-310

Reference Genes

BioGPS Gene:6382 SDC1

COSMIC (genes):SDC1 SDC1

CTD Gene:6382 SDC1

dbSNP Gene:6382 SDC1

ENSEMBL:ENSG00000115884 SDC1

HGNC:10658 SDC1

KEGG Gene (Homo sapiens):6382 SDC1

Monarch:6382 SDC1

NCBI Gene:6382 SDC1

OMIM:186355 SDC1

UCSC:P18827 SDC1

Reference Transcript

Other Identifiers

0000110377

11716577_s_at

11752754_s_at

11758139_s_at

16894911

201286_PM_at

201286_at

201287_PM_s_at

201287_s_at

2542796

2542797

2542798

2542799

2542800

2542801

2542802

2542812

2542813

2542814

2542815

38127_at

6382

8050557

A_23_P16944

A_24_P97129

GE60412

GO:0000003

GO:0001657

GO:0003674

GO:0005515

GO:0005575

GO:0005576

GO:0005615

GO:0005622

GO:0005737

GO:0005764

GO:0005773

GO:0005794

GO:0005796

GO:0005886

GO:0005887

GO:0006810

GO:0006950

GO:0006954

GO:0007165

GO:0007267

GO:0008022

GO:0008150

GO:0009636

GO:0009897

GO:0009986

GO:0010033

GO:0016020

GO:0016021

GO:0016192

GO:0016477

GO:0022607

GO:0030154

GO:0032991

GO:0040011

GO:0042060

GO:0042476

GO:0042542

GO:0042802

GO:0043202

GO:0043226

GO:0048627

GO:0048856

GO:0048870

GO:0051384

GO:0051591

GO:0051592

GO:0055002

GO:0060009

GO:0060070

GO:0070062

GO:1903543

GO:1903553

HMNXSV003006280

Hs.82109.0.S2_3p_at

ILMN_1735304

ILMN_1768953

ILMN_1800038

ILMN_1815308

PH_hs_0004693

TC02001619.hg

Z48199_at

g4506858_3p_s_at

Participates

as a member of

xylosyl-core proteins [Golgi lumen] (Homo sapiens)

Other forms of this molecule

SDC1 [plasma membrane]

SDC1 [lysosomal lumen]

HS(6)-SDC1 [lysosomal lumen]

HS(6)-SDC1 [Golgi lumen]

HS(5)-SDC1 [Golgi lumen]

Heparan-SDC1 [Golgi lumen]

Heparan(1)-SDC1 [Golgi lumen]

Heparan(2)-SDC1 [Golgi lumen]

Heparan(3)-SDC1 [Golgi lumen]

Heparan(4)-SDC1 [Golgi lumen]

HS(1)-SDC1 [Golgi lumen]

HS(2)-SDC1 [Golgi lumen]

HS(4)-SDC1 [Golgi lumen]

HS(3)-SDC1 [Golgi lumen]

GlcA-Gal-Gal-Xyl-SDC1 [Golgi lumen]

Gal-Gal-Xyl-SDC1 [Golgi lumen]

HS(4)-SDC1 [plasma membrane]

HS(6)-SDC1 [plasma membrane]

HS(2)-SDC1 [plasma membrane]

HS(1)-SDC1 [plasma membrane]

HS(3)-SDC1 [plasma membrane]

HS(5)-SDC1 [plasma membrane]

Gal-Xyl-SDC1 [Golgi lumen]

SDC1 [Golgi lumen]

Inferred To

Sdc1 [Golgi lumen] (Mus musculus)

Sdc1 [Golgi lumen] (Rattus norvegicus)

sdc1 [Golgi lumen] (Xenopus tropicalis)

SDC1 [Golgi lumen] (Bos taurus)

SDC1 [Golgi lumen] (Canis familiaris)

SDC1 [Golgi lumen] (Gallus gallus)

SDC1 [Golgi lumen] (Sus scrofa)

Sdc [Golgi lumen] (Drosophila melanogaster)

sdn-1 [Golgi lumen] (Caenorhabditis elegans)

Modified Residues

Name

O-xylosyl-L-serine at unknown position

PsiMod Name

O-xylosyl-L-serine

PsiMod Definition

A protein modification that effectively converts an L-serine residue to O3-xylosylserine.

Cross References

RefSeq

NP_001006947.1, NP_002988.3

OpenTargets

ENSG00000115884

GeneCards

P18827

HPA

ENSG00000115884-SDC1

Ensembl

ENSP00000254351, ENSP00000370542, ENST00000381150, ENSG00000115884, ENST00000254351

PRO

P18827

Pharos - Targets

P18827

HMDB Protein

HMDBP02143

PDB

4GVD, 4GVC, 6EJE

Interactors (4)

Accession	#Entities	Entities	Confidence Score	Evidence (IntAct)
UniProt:Q13009 TIAM1	2	p-Y829-TIAM1 [cytosol] (R-HSA-3928461) TIAM1 [cytosol] (R-HSA-195013)	0.655	5
UniProt:P05067 APP	20	APP(18-770) [trans-Golgi network membrane] (R-HSA-5229136) APP-C99 [cytosol] (R-HSA-9617603) APP(18-687) [extracellular region] (R-HSA-9010033) APP(688-770) [plasma membrane] (R-HSA-9010028) APP(18-770) [Golgi lumen] (R-HSA-8871509) APP(18-770) [plasma membrane] (R-HSA-9010038) APP(18-671) [endosome lumen] (R-HSA-5693003) APP(714-770) [endosome lumen] (R-HSA-6783325) APP(712-770) [endosome lumen] (R-HSA-6783331) APP(672-770) [endosome lumen] (R-HSA-9010082) APP(672-713) [endosome lumen] (R-HSA-5692993) APP(672-711) [endosome lumen] (R-HSA-6783333) APP(18-770) [endosome lumen] (R-HSA-5229077) APP(18-770) [extracellular region] (R-HSA-49335) APP(18-770) [platelet alpha granule lumen] (R-HSA-139835) p-APP [endoplasmic reticulum lumen] (R-HSA-8957012) APP [endoplasmic reticulum lumen] (R-HSA-8956696) APP(672-711) [extracellular region] (R-HSA-976740) APP(672-711) [cytosol] (R-HSA-877188) APP(672-713) [extracellular region] (R-HSA-879340)	0.556	3
UniProt:P18827 SDC1	20	SDC1 [plasma membrane] (R-HSA-174758) SDC1 [lysosomal lumen] (R-HSA-2090025) HS(6)-SDC1 [lysosomal lumen] (R-HSA-2090082) HS(6)-SDC1 [Golgi lumen] (R-HSA-2076520) HS(5)-SDC1 [Golgi lumen] (R-HSA-2076290) Heparan-SDC1 [Golgi lumen] (R-HSA-2076561) Heparan(1)-SDC1 [Golgi lumen] (R-HSA-2076349) Heparan(2)-SDC1 [Golgi lumen] (R-HSA-2076558) Heparan(3)-SDC1 [Golgi lumen] (R-HSA-2076314) Heparan(4)-SDC1 [Golgi lumen] (R-HSA-2076339) HS(1)-SDC1 [Golgi lumen] (R-HSA-2076321) HS(2)-SDC1 [Golgi lumen] (R-HSA-2076309) HS(4)-SDC1 [Golgi lumen] (R-HSA-2076593) HS(3)-SDC1 [Golgi lumen] (R-HSA-2076444) GlcA-Gal-Gal-Xyl-SDC1 [Golgi lumen] (R-HSA-2064082) Gal-Gal-Xyl-SDC1 [Golgi lumen] (R-HSA-2064247) HS(4)-SDC1 [plasma membrane] (R-HSA-2076693) HS(6)-SDC1 [plasma membrane] (R-HSA-2076652) HS(2)-SDC1 [plasma membrane] (R-HSA-2076666) HS(1)-SDC1 [plasma membrane] (R-HSA-2076672)	0.542	2
UniProt:O15530 PDPK1	2	PDPK1 [cytosol] (R-HSA-202210) PDPK1 [plasma membrane] (R-HSA-61459)	0.527	3

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