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wu:fe48d04 [nucleoplasm]
Stable Identifier
R-DRE-5649651
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
PNKP, A0A0R4IRS4
Locations in the PathwayBrowser
Expand all
DNA Repair (Danio rerio)
Base Excision Repair (Danio rerio)
Resolution of Abasic Sites (AP sites) (Danio rerio)
APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway (Danio rerio)
LIG3 ligates NEIL1,NEIL2-generated single strand break (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:SSB-dsDNA [nucleoplasm] (Danio rerio)
wu:fe48d04 [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:dsDNA [nucleoplasm] (Danio rerio)
wu:fe48d04 [nucleoplasm] (Danio rerio)
PNKP hydrolyzes the terminal 3'Pi at the NEIL1,NEIL2-generated single strand break (SSB) (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:SSB(3'Pi)-gap-dsDNA [nucleoplasm] (Danio rerio)
wu:fe48d04 [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:POLB:LIG3:XRCC1:PNKP:SSB-gap-dsDNA [nucleoplasm] (Danio rerio)
wu:fe48d04 [nucleoplasm] (Danio rerio)
wu:fe48d04 [nucleoplasm] (Danio rerio)
POLB incorporates a single nucleotide in place of excised AP residue in NEIL1,NEIL2-mediated AP site resolution (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:SSB-dsDNA [nucleoplasm] (Danio rerio)
wu:fe48d04 [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:POLB:LIG3:XRCC1:PNKP:SSB-gap-dsDNA [nucleoplasm] (Danio rerio)
wu:fe48d04 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:A0A0R4IRS4
Gene Names
wu:fe48d04
Reference Genes
BioGPS Gene:569462 wu:fe48d04
ENSEMBL:ENSDARG00000100455
ENSEMBL:ENSDARG00000100455.2 wu:fe48d04
ENSEMBL:ENSDARG00000114060.1 wu:fe48d04
Monarch:569462 wu:fe48d04
NCBI Gene:569462 wu:fe48d04
Reference Transcript
RefSeq:XM_005173382.3 wu:fe48d04
Other Identifiers
13018879
569462
A_15_P175611
A_15_P571326
CUST_1442_PI428451958
CUST_2556_PI428451953
CUST_2557_PI428451953
DRER31729
DRER41534
ENSDART00000099140
ENSDART00000099140_1
ENSDART00000099140_2
GO:0003677
GO:0003690
GO:0003824
GO:0005515
GO:0005634
GO:0006281
GO:0016740
GO:0016787
GO:0043226
GO:0046403
GO:0046404
GT_Spec_XM_003200024.2_351737
GT_Xhyb_NM_001077578.2_10821
GT_Xhyb_XM_005158269.1_386255
GT_Xhyb_XM_005173382.1_5481
GT_Xhyb_XM_005173383.1_5471
MADDr01004290
NM_001077578
Participates
as a component of
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:SSB(3'Pi)-gap-dsDNA [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:POLB:LIG3:XRCC1:PNKP:SSB-gap-dsDNA [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:dsDNA [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:SSB-dsDNA [nucleoplasm] (Danio rerio)
Inferred From
PNKP [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
XP_005173439.1
ZFIN
ZDB-GENE-061013-433
Ensembl
ENSDARP00000130085
,
ENSDARG00000114060
,
ENSDARP00000156811
,
ENSDART00000162707
,
ENSDARG00000100455
,
ENSDARP00000149273
,
ENSDART00000165520
,
ENSDART00000183155
,
ENSDART00000189166
,
ENSDARP00000139368
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