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cdk9 [nucleoplasm]
Stable Identifier
R-DRE-51801
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
CDK9, Q7SXE8
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Danio rerio)
RNA Polymerase II Transcription (Danio rerio)
Generic Transcription Pathway (Danio rerio)
Transcriptional Regulation by TP53 (Danio rerio)
TP53 Regulates Transcription of DNA Repair Genes (Danio rerio)
CCNK:CDK12 binds RNA Pol II at DNA repair genes (Danio rerio)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Danio rerio)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Danio rerio)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Danio rerio)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
CDK12 phosphorylates RNA Pol II CTD at DNA repair genes (Danio rerio)
CCNK:CDK12:CDK12-Phosphorylated Elongation Complex at DNA repair genes [nucleoplasm] (Danio rerio)
CDK12-Phosphorylated Elongation Complex [nucleoplasm] (Danio rerio)
CDK12-phosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Danio rerio)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Danio rerio)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Danio rerio)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Danio rerio)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Danio rerio)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RNA Polymerase II Pre-transcription Events (Danio rerio)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Danio rerio)
Paused processive elongation complex [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Abortive termination of elongation after arrest (Danio rerio)
Aborted elongation complex after arrest [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Formation of P-TEFb complex (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Resumption of elongation after recovery from pausing (Danio rerio)
Paused processive elongation complex [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
TFIIS-mediated recovery of elongation from arrest (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RNA Polymerase II Transcription Elongation (Danio rerio)
Addition of nucleotides leads to transcript elongation (Danio rerio)
Elongation complex [nucleoplasm] (Danio rerio)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Pol II elongation complex moves on the template as transcript elongates (Danio rerio)
Elongation complex prior to separation [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Separation of elongating transcript from template (Danio rerio)
Elongation complex prior to separation [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RNA polymerase II transcribes snRNA genes (Danio rerio)
CDK7 phosphorylates serine-5 and serine-7 of heptad repeats in C-terminal domain of RNA polymerase II at snRNA promoter (Danio rerio)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Danio rerio)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
General transcription factors bind SNAPc:POU2F1:ZNF143:snRNA gene (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Integrator complex processes the 3' end of snRNA (Danio rerio)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:Initiation factors:snRNA gene [nucleoplasm] (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Pre-snRNA is elongated and capped with 7-methylguanosine (Danio rerio)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Pre-snRNA transcript initiation, Integrator binding, LEC binding (Danio rerio)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RNA polymerase II binds initiation factors at promoter of snRNA gene (U1, U2, U4, U4atac, U5, U11, U12) (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Danio rerio)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RPAP2 binds RNA polymerase II phosphorylated at serine-7 residues of heptad repeats in the C-terminal domain (Danio rerio)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Danio rerio)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Signal Transduction (Danio rerio)
Signaling by Nuclear Receptors (Danio rerio)
ESR-mediated signaling (Danio rerio)
Estrogen-dependent gene expression (Danio rerio)
ESR1:ESTG:P-TEFb recruited to paused RNA polymerase II on MYB gene (Danio rerio)
ESR1:ESTG:P-TEFb [nucleoplasm] (Danio rerio)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Danio rerio)
ESR1:ESTG:P-TEFb [nucleoplasm] (Danio rerio)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
p-TEFb phosphorylates serine 2 in RNA polymerase II CTD (Danio rerio)
MYB gene:hyperphosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Danio rerio)
ESR1:ESTG:P-TEFb [nucleoplasm] (Danio rerio)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Danio rerio)
ESR1:ESTG:P-TEFb [nucleoplasm] (Danio rerio)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
Signaling by TGFB family members (Danio rerio)
Signaling by TGF-beta Receptor Complex (Danio rerio)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Danio rerio)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Danio rerio)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Danio rerio)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Danio rerio)
P-TEFb complex [nucleoplasm] (Danio rerio)
cdk9 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:Q7SXE8
Gene Names
cdk9
Reference Genes
BioGPS Gene:321602 cdk9
ENSEMBL:ENSDARG00000044811
ENSEMBL:ENSDARG00000111590 cdk9
KEGG Gene (Danio rerio):321602 cdk9
Monarch:321602 cdk9
NCBI Gene:321602 cdk9
Reference Transcript
RefSeq:NM_212591.1 cdk9
Other Identifiers
13107875
321602
A_15_P116748
A_15_P261056
CJ013501
DRER09348
Dr.26326.1.S1_at
ENSDART00000065859
ENSDART00000065859_1
ENSDART00000065859_2
GO:0000166
GO:0003674
GO:0004672
GO:0004674
GO:0004693
GO:0005524
GO:0005575
GO:0005622
GO:0005634
GO:0005654
GO:0005737
GO:0006259
GO:0006281
GO:0006464
GO:0006468
GO:0006950
GO:0006974
GO:0007049
GO:0008150
GO:0008283
GO:0008353
GO:0016301
GO:0016310
GO:0016605
GO:0016740
GO:0022607
GO:0034641
GO:0040007
GO:0043167
GO:0043226
GO:0048856
GO:0051726
GO:0060043
GO:0061026
GO:0065003
GO:0090594
LOLS05942
MADDr01007172
OTTDART00000026475
Participates
as a component of
P-TEFb complex [nucleoplasm] (Danio rerio)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Danio rerio)
as an input of
Formation of P-TEFb complex (Danio rerio)
Inferred From
CDK9 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_997756.1
Ensembl
ENSDART00000166287
,
ENSDARG00000044811
,
ENSDARP00000134607
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