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APEX1 [nucleoplasm]
Stable Identifier
R-DRE-50119
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
A0MTA1
Locations in the PathwayBrowser
Expand all
DNA Repair (Danio rerio)
Base Excision Repair (Danio rerio)
Resolution of Abasic Sites (AP sites) (Danio rerio)
APEX1 mediates endonucleolytic cleavage at the 5' side of the AP site (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
APEX1:AP-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
Displacement of DNA glycosylase by APEX1 (Danio rerio)
Displacement of MPG glycosylase by APEX1 at the AP site (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
APEX1:AP-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
Displacement of TDG glycosylase by APEX1 at the AP site (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
APEX1:AP-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
Displacement of UNG glycosylase by APEX1 at the AP site (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
APEX1:AP-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
Resolution of AP sites via the multiple-nucleotide patch replacement pathway (Danio rerio)
Oxidative damage to the AP site (Danio rerio)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
POLB incorporates the first 3' dNMP and displaces 5'ddRP at SSB site (Danio rerio)
POLB:APEX1:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
POLB:APEX1:SSB(5'ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
POLB-Dependent Long Patch Base Excision Repair (Danio rerio)
PARP1,PARP2 dimers and FEN1 bind POLB and displace APEX1 from damaged AP site (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
POLB:APEX1:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
Recruitment of POLB to oxidatively damaged AP site (Danio rerio)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
POLB:APEX1:SSB(5'ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
Resolution of AP sites via the single-nucleotide replacement pathway (Danio rerio)
Abasic sugar-phosphate removal via the single-nucleotide replacement pathway (Danio rerio)
Excision of the abasic sugar phosphate (5'dRP) residue at the single strand break (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
POLB:APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
Recruitment of POLB to the AP site (Danio rerio)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
POLB:APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:A0MTA1
Reference Genes
ENSEMBL:ENSDARG00000045843
Participates
as an output of
Excision of the abasic sugar phosphate (5'dRP) residue at the single strand break (Danio rerio)
PARP1,PARP2 dimers and FEN1 bind POLB and displace APEX1 from damaged AP site (Danio rerio)
as a component of
APEX1:SSB(AP->5'-dRP)-dsDNA [nucleoplasm] (Danio rerio)
POLB:APEX1:SSB(3'dNMP-displaced 5'ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1:SSB(5'-ddRP)-dsDNA [nucleoplasm] (Danio rerio)
APEX1:AP-dsDNA [nucleoplasm] (Danio rerio)
as an input of
Displacement of TDG glycosylase by APEX1 at the AP site (Danio rerio)
Displacement of UNG glycosylase by APEX1 at the AP site (Danio rerio)
Displacement of MPG glycosylase by APEX1 at the AP site (Danio rerio)
Inferred From
APEX1 [nucleoplasm]
(Homo sapiens)
Cross References
ZFIN
ZDB-GENE-040426-2761
PRO
A0MTA1
PDB
2O3C
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