Reactome | col4a6 [endoplasmic reticulum lumen]

col4a6 [endoplasmic reticulum lumen]

Stable Identifier

R-DRE-2023641

Type

Protein [EntityWithAccessionedSequence]

Species

Danio rerio

Compartment

endoplasmic reticulum lumen

Synonyms

3x4Hyp-3Hyp-GlcGalHyl-COL4A6, F1QYN1

Locations in the PathwayBrowser

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Extracellular matrix organization (Danio rerio)

- Collagen formation (Danio rerio)
  - Collagen biosynthesis and modifying enzymes (Danio rerio)
    - Glucosylation of collagen propeptide hydroxylysines (Danio rerio)
      - PLOD3:Fe2+ dimer:Glucosyl-galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
        
        Glucosyl-galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
        
        3,4-Hyp Glu-Gal-Hyl-collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
        
        col4a6 [endoplasmic reticulum lumen] (Danio rerio)
    - PLOD3:Fe2+ dimer:Glucosyl-galactosyl-hydroxylysyl collagen propeptides dissociates (Danio rerio)
      - Glucosyl-galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
        
        3,4-Hyp Glu-Gal-Hyl-collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
        
        col4a6 [endoplasmic reticulum lumen] (Danio rerio)
      - PLOD3:Fe2+ dimer:Glucosyl-galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
        
        Glucosyl-galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
        
        3,4-Hyp Glu-Gal-Hyl-collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
        
        col4a6 [endoplasmic reticulum lumen] (Danio rerio)

External Reference Information

External Reference

UniProt:F1QYN1

Gene Names

col4a6

Reference Genes

ENSEMBL:ENSDARG00000052061

Other Identifiers

13239875

13284688

554268

A_15_P144881

A_15_P490222

CUST_10903_PI428451958

ENSDART00000037162

ENSDART00000037162_1

ENSDART00000037162_2

GO:0000902

GO:0003674

GO:0005198

GO:0005201

GO:0005575

GO:0005576

GO:0005581

GO:0005587

GO:0005615

GO:0007165

GO:0008150

GO:0030154

GO:0030198

GO:0031012

GO:0032991

GO:0038063

GO:0040007

GO:0040011

GO:0048846

GO:0048856

GO:0071711

Participant Of

hasCandidate

3,4-Hyp Glu-Gal-Hyl-collagen propeptides [endoplasmic reticulum lumen]

Other forms of this molecule

col4a6 [endoplasmic reticulum lumen]

col4a6 [extracellular region]

Inferred From

3x4Hyp-3Hyp-GlcGalHyl-COL4A6 [endoplasmic reticulum lumen] (Homo sapiens)

Modified Residues

Name

(2S,4R)-4-hydroxyproline at unknown position

PsiMod Name

(2S,4R)-4-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline

Name

(2S,4R)-4-hydroxyproline at unknown position

PsiMod Name

(2S,4R)-4-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline

Name

(2S,4R)-4-hydroxyproline at unknown position

PsiMod Name

(2S,4R)-4-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline

Name

(2S,3S)-3-hydroxyproline at unknown position

PsiMod Name

(2S,3S)-3-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 3-hydroxy-L-proline.

Name

O5-glucosylgalactosyl-L-hydroxylysine at unknown position

PsiMod Name

O5-glucosylgalactosyl-L-hydroxylysine

PsiMod Definition

A protein modification that effectively converts an L-lysine residue to O5-glucosylgalactosyl-L-hydroxylysine.

Cross References

ZFIN

ZDB-GENE-101001-2

Ensembl

ENSDARP00000105937, ENSDARG00000052061, ENSDART00000121574