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CDK9 [nucleoplasm]
Stable Identifier
R-SSC-51801
Type
Protein [EntityWithAccessionedSequence]
Species
Sus scrofa
Compartment
nucleoplasm
Synonyms
C9E1C9
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Sus scrofa)
RNA Polymerase II Transcription (Sus scrofa)
Generic Transcription Pathway (Sus scrofa)
Transcriptional Regulation by TP53 (Sus scrofa)
TP53 Regulates Transcription of DNA Repair Genes (Sus scrofa)
CCNK:CDK12 binds RNA Pol II at DNA repair genes (Sus scrofa)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Sus scrofa)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Sus scrofa)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Sus scrofa)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
CDK12 phosphorylates RNA Pol II CTD at DNA repair genes (Sus scrofa)
CCNK:CDK12:CDK12-Phosphorylated Elongation Complex at DNA repair genes [nucleoplasm] (Sus scrofa)
CDK12-Phosphorylated Elongation Complex [nucleoplasm] (Sus scrofa)
CDK12-phosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Sus scrofa)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Sus scrofa)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Sus scrofa)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Sus scrofa)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Sus scrofa)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RNA Polymerase II Pre-transcription Events (Sus scrofa)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Sus scrofa)
Paused processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Sus scrofa)
Processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Abortive termination of elongation after arrest (Sus scrofa)
Aborted elongation complex after arrest [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Elongating transcript encounters a lesion in the template (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Formation of P-TEFb complex (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Resumption of elongation after recovery from pausing (Sus scrofa)
Paused processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
TFIIS-mediated recovery of elongation from arrest (Sus scrofa)
Processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RNA Polymerase II Transcription Elongation (Sus scrofa)
Addition of nucleotides leads to transcript elongation (Sus scrofa)
Elongation complex [nucleoplasm] (Sus scrofa)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Formation of RNA Pol II elongation complex (Sus scrofa)
Hyperphosphorylation (Ser2) of RNA Pol II CTD by P-TEFb complex (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Recruitment of elongation factors to form elongation complex (Sus scrofa)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Elongation complex [nucleoplasm] (Sus scrofa)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Pol II elongation complex moves on the template as transcript elongates (Sus scrofa)
Elongation complex prior to separation [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Processive elongation complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Separation of elongating transcript from template (Sus scrofa)
Elongation complex prior to separation [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RNA polymerase II transcribes snRNA genes (Sus scrofa)
CBCAP complex binds 7-methylguanosine cap of snRNA (Sus scrofa)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
CDK7 phosphorylates serine-5 and serine-7 of heptad repeats in C-terminal domain of RNA polymerase II at snRNA promoter (Sus scrofa)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Sus scrofa)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Integrator complex processes the 3' end of snRNA (Sus scrofa)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:Initiation factors:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Pre-snRNA is elongated and capped with 7-methylguanosine (Sus scrofa)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Pre-snRNA transcript initiation, Integrator binding, LEC binding (Sus scrofa)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RNA polymerase II binds initiation factors at promoter of snRNA gene (U1, U2, U4, U4atac, U5, U11, U12) (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Sus scrofa)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RPAP2 binds RNA polymerase II phosphorylated at serine-7 residues of heptad repeats in the C-terminal domain (Sus scrofa)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Sus scrofa)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Signal Transduction (Sus scrofa)
Signaling by Nuclear Receptors (Sus scrofa)
ESR-mediated signaling (Sus scrofa)
Estrogen-dependent gene expression (Sus scrofa)
ESR1:ESTG:P-TEFb recruited to paused RNA polymerase II on MYB gene (Sus scrofa)
ESR1:ESTG:P-TEFb [nucleoplasm] (Sus scrofa)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Sus scrofa)
ESR1:ESTG:P-TEFb [nucleoplasm] (Sus scrofa)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
p-TEFb phosphorylates serine 2 in RNA polymerase II CTD (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
MYB gene:hyperphosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Sus scrofa)
ESR1:ESTG:P-TEFb [nucleoplasm] (Sus scrofa)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Sus scrofa)
ESR1:ESTG:P-TEFb [nucleoplasm] (Sus scrofa)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
Signaling by TGFB family members (Sus scrofa)
Signaling by TGF-beta Receptor Complex (Sus scrofa)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Sus scrofa)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Sus scrofa)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Sus scrofa)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
CDK9 [nucleoplasm] (Sus scrofa)
External Reference Information
External Reference
UniProt:C9E1C9
Reference Genes
BioGPS Gene:100307051
ENSEMBL:ENSSSCG00000005621.5
ENSEMBL:ENSSSCG00005027627.1
KEGG Gene (Sus scrofa):100307051
Monarch:100307051
NCBI Gene:100307051
Reference Transcript
RefSeq:NM_001166044.1
Other Identifiers
100307051
GO:0000166
GO:0000976
GO:0000978
GO:0001223
GO:0003677
GO:0003682
GO:0003723
GO:0003824
GO:0004672
GO:0004674
GO:0004693
GO:0005524
GO:0005634
GO:0005654
GO:0006260
GO:0006281
GO:0006282
GO:0006325
GO:0006351
GO:0006355
GO:0006366
GO:0006468
GO:0008023
GO:0008024
GO:0008353
GO:0016071
GO:0016301
GO:0016605
GO:0016740
GO:0017069
GO:0019901
GO:0030154
GO:0031297
GO:0031440
GO:0032968
GO:0036211
GO:0036464
GO:0043226
GO:0043923
GO:0045944
GO:0048856
GO:0051147
GO:0051647
GO:0051726
GO:0070691
GO:0071345
GO:0097322
GO:0120186
GO:0120187
GO:0140096
GO:0140673
Ssc.3824.1.S1_at
Participates
as an input of
Formation of P-TEFb complex (Sus scrofa)
as a component of
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Sus scrofa)
P-TEFb complex [nucleoplasm] (Sus scrofa)
Inferred From
CDK9 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001159516.1
Ensembl
ENSSSCT00000006181
,
ENSSSCG00000005621
,
ENSSSCP00000006022
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