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5Hyl-COL1A1(23-1464) [extracellular region]
Stable Identifier
R-RNO-2268624
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
extracellular region
Synonyms
P02454
Locations in the PathwayBrowser
Expand all
Extracellular matrix organization (Rattus norvegicus)
Collagen formation (Rattus norvegicus)
Collagen biosynthesis and modifying enzymes (Rattus norvegicus)
Removal of fibrillar collagen N-propeptides (Rattus norvegicus)
Fibrillar procollagens [extracellular region] (Rattus norvegicus)
Procollagen type I [extracellular region] (Rattus norvegicus)
Alpha-1(I) propeptides [extracellular region] (Rattus norvegicus)
5Hyl-COL1A1(23-1464) [extracellular region] (Rattus norvegicus)
Secretion of collagens (Rattus norvegicus)
Collagens and tropocollagens [extracellular region] (Rattus norvegicus)
Fibrillar procollagens [extracellular region] (Rattus norvegicus)
Procollagen type I [extracellular region] (Rattus norvegicus)
Alpha-1(I) propeptides [extracellular region] (Rattus norvegicus)
5Hyl-COL1A1(23-1464) [extracellular region] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:P02454 Col1a1
Gene Names
Col1a1
Chain
signal peptide:1-22, propeptide:23-151, chain:152-1207, propeptide:1208-1453
Reference Genes
BioGPS Gene:29393 Col1a1
ENSEMBL:ENSRNOG00000003897.7 Col1a1
ENSEMBL:ENSRNOG00055032354 Col1a1
ENSEMBL:ENSRNOG00060019866 Col1a1
ENSEMBL:ENSRNOG00065020003 Col1a1
KEGG Gene (Rattus norvegicus):29393 Col1a1
Monarch:29393 Col1a1
NCBI Gene:29393 Col1a1
UCSC:P02454 Col1a1
Reference Transcript
RefSeq:NM_053304.1 Col1a1
Other Identifiers
10737532
1370864_at
1388116_at
17650326
29393
5637096
5650889
5654945
5677698
5690588
5703493
5709901
5714661
5753389
5781390
5793943
5801762
5829050
5884651
5890654
5904465
5923661
5929562
5963898
6014611
6015931
6019144
6059876
6067504
6107853
6118147
6122922
6169622
6191220
6202136
6208357
6247463
6329947
6370863
6404744
6423332
6423509
6451670
6452386
6456386
6468296
6469196
6480688
6485472
6492855
6500682
6511985
6583724
6607583
6617386
6671299
6682004
A_44_P238421
A_44_P350521
A_64_P040278
GE21222
GE22042
GO:0001501
GO:0001568
GO:0001649
GO:0001957
GO:0001958
GO:0002020
GO:0005198
GO:0005201
GO:0005515
GO:0005576
GO:0005581
GO:0005584
GO:0005615
GO:0005737
GO:0006351
GO:0006355
GO:0007155
GO:0007601
GO:0007605
GO:0010718
GO:0010812
GO:0015031
GO:0023052
GO:0030154
GO:0030198
GO:0030199
GO:0030312
GO:0030335
GO:0031012
GO:0032964
GO:0034504
GO:0034505
GO:0042802
GO:0043588
GO:0043589
GO:0045893
GO:0048407
GO:0048705
GO:0048706
GO:0048856
GO:0048870
GO:0050877
GO:0060325
GO:0060346
GO:0060351
GO:0062023
GO:0071230
GO:0071260
GO:0090263
ILMN_1361396
M27207mRNA_s_at
PH_rn_0002387
PH_rn_0021191
U75405UTR#1_f_at
Z78279_at
Z78279_g_at
rc_AI231472_s_at
Participates
as a member of
Alpha-1(I) propeptides [extracellular region] (Rattus norvegicus)
Other forms of this molecule
3x4Hyp-3Hyp-GlcGalHyl-COL1A1(23-1464) [endoplasmic reticulum lumen]
3x4Hyp-GlcGalHyl-COL1A1(23-1464) [endoplasmic reticulum lumen]
GlcGalHyl-COL1A1(23-1464) [endoplasmic reticulum lumen]
GalHyl-COL1A1(23-1464) [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-GalHyl-COL1A1(23-1464) [endoplasmic reticulum lumen]
3x4Hyp-GalHyl-COL1A1(23-1464) [endoplasmic reticulum lumen]
COL1A1(23-1464) [endoplasmic reticulum lumen]
3x4Hyp-COL1A1(23-1464) [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-COL1A1(23-1464) [endoplasmic reticulum lumen]
3x4Hyp-5Hyl-COL1A1(23-1464) [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-5Hyl-COL1A1(23-1464) [endoplasmic reticulum lumen]
5Hyl-COL1A1(23-1464) [endoplasmic reticulum lumen]
Lysyl-pyrrolyl 5-hydroxylysyl collagen alpha-1(I) chain [extracellular region]
Lysyl-pyrrolyl 3,4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Lysyl-pyrrolyl 4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Lysyl-pyridinolyl 5-hydroxylysyl collagen alpha-1(I) chain [extracellular region]
Lysyl-pyridinolyl 4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Lysyl-pyridinolyl 3,4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 4-hydroxyprolyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 4-Hyp 5-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 3,4-hydroxyprolyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 4-Hyp Glu-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl Collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 5-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 3,4-Hyp 5-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl Glu-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 3,4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 3,4-Hyp Glu-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrolysinonorlysyl 5-hydroxylysl-collagen alpha-1(I) chain [extracellular region]
Hydroxylysyl-pyrrolyl 4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Hydroxylysyl-pyrrolyl 3,4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Hydroxylysyl-pyrrolyl 5-hydroxylysyl collagen alpha-1(I) chain [extracellular region]
Lysino-5-ketonorlysyl 5-hydroxylysl-collagen alpha-1(I) chain [extracellular region]
Lysino-5-ketonorlysyl 4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Lysino-5-ketonorlysyl 3,4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
3x4Hyp-3Hyp-Alys-COL1A1 [extracellular region]
Alys-COL1A1 [extracellular region]
3x4Hyp-Alys-COL1A1 [extracellular region]
Alys-GalHyl-COL1A1 [extracellular region]
3x4Hyp-Alys-GlcGalHyl-COL1A1 [extracellular region]
3x4Hyp-3Hyp-5Hyl-Alys-COL1A1 [extracellular region]
3x4Hyp-5Hyl-Alys-COL1A1 [extracellular region]
3x4Hyp-3Hyp-Alys-GlcGalHyl-COL1A1 [extracellular region]
Alys-GlcGalHyl-COL1A1 [extracellular region]
3x4Hyp-Alys-GalHyl-COL1A1 [extracellular region]
5Hyl-Alys-COL1A1 [extracellular region]
3x4Hyp-3Hyp-Alys-GalHyl-COL1A1 [extracellular region]
Dehydrohydroxylysinonorlysyl Glu-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 3,4-hydroxyprolyl collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 3,4-Hyp Glu-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 5-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 3,4-Hyp 5-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 4-Hyp Glu-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 5-hydroxylysl-collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl Collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 4-hydroxyprolyl collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 3,4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Dehydrohydroxylysinonorlysyl 4-Hyp 5-Gal-Hyl collagen alpha-1(I) chain [extracellular region]
Hydroxylysyl-pyridinolyl 5-hydroxylysyl collagen alpha-1(I) chain [extracellular region]
Hydroxylysyl-pyridinolyl 3,4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Hydroxylysyl-pyridinolyl 4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Hydroxylysino-5-ketonorlysyl 4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Hydroxylysino-5-ketonorlysyl 3,4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Hydroxylysino-5-ketonorlysyl 5-hydroxylysyl-collagen alpha-1(I) chain [extracellular region]
Hydroxyallysyl 5-hydroxylysyl collagen alpha-1(I) chain [extracellular region]
Hydroxyallysyl 3,4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
Hydroxyallysyl 4-Hyp 5-Hyl collagen alpha-1(I) chain [extracellular region]
3x4Hyp-3Hyp-GalHyl-COL1A1(23-1464) [extracellular region]
GalHyl-COL1A1(23-1464) [extracellular region]
3x4Hyp-3Hyp-GlcGalHyl-COL1A1(23-1464) [extracellular region]
GlcGalHyl-COL1A1(23-1464) [extracellular region]
3x4Hyp-GalHyl-COL1A1(23-1464) [extracellular region]
3x4Hyp-3Hyp-5Hyl-COL1A1(23-1464) [extracellular region]
COL1A1(23-1464) [extracellular region]
3x4Hyp-3Hyp-COL1A1(23-1464) [extracellular region]
3x4Hyp-GlcGalHyl-COL1A1(23-1464) [extracellular region]
3x4Hyp-5Hyl-COL1A1(23-1464) [extracellular region]
3x4Hyp-COL1A1(23-1464) [extracellular region]
3x4Hyp-GlcGalHyl-COL1A1(162-1464) [extracellular region]
3x4Hyp-GalHyl-COL1A1(162-1464) [extracellular region]
3x4Hyp-3Hyp-GalHyl-COL1A1(162-1464) [extracellular region]
3x4Hyp-5Hyl-COL1A1(162-1464) [extracellular region]
5Hyl-COL1A1(162-1464) [extracellular region]
GlcGalHyl-COL1A1(162-1464) [extracellular region]
3x4Hyp-3Hyp-GlcGalHyl-COL1A1(162-1464) [extracellular region]
3x4Hyp-3Hyp-5Hyl-COL1A1(162-1464) [extracellular region]
GalHyl-COL1A1(162-1464) [extracellular region]
3x4Hyp-COL1A1(162-1464) [extracellular region]
COL1A1(162-1464) [extracellular region]
3x4Hyp-3Hyp-COL1A1(162-1464) [extracellular region]
Collagen alpha-1(I) chain C-term fragment [extracellular region]
Collagen alpha-1(I) chain N-term fragment [extracellular region]
3x4Hyp-3Hyp-COL1A1(954-1218) [extracellular region]
3x4Hyp-3Hyp-GlcGalHyl-COL1A1(954-1218) [extracellular region]
GlcGalHyl-COL1A1(162-953) [extracellular region]
COL1A1(954-1218) [extracellular region]
3x4Hyp-GalHyl-COL1A1(162-953) [extracellular region]
3x4Hyp-GalHyl-COL1A1(954-1218) [extracellular region]
3x4Hyp-3Hyp-GlcGalHyl-COL1A1(162-953) [extracellular region]
3x4Hyp-5Hyl-COL1A1(954-1218) [extracellular region]
3x4Hyp-3Hyp-GalHyl-COL1A1(954-1218) [extracellular region]
3x4Hyp-GlcGalHyl-COL1A1(162-953) [extracellular region]
3x4Hyp-5Hyl-COL1A1(162-953) [extracellular region]
3x4Hyp-3Hyp-5Hyl-COL1A1(954-1218) [extracellular region]
3x4Hyp-3Hyp-GalHyl-COL1A1(162-953) [extracellular region]
GalHyl-COL1A1 [extracellular region]
3x4Hyp-3Hyp-GalHyl-COL1A1 [extracellular region]
3x4Hyp-3Hyp-GlcGalHyl-COL1A1 [extracellular region]
COL1A1 [extracellular region]
3x4Hyp-5Hyl-COL1A1 [extracellular region]
5Hyl-COL1A1 [extracellular region]
3x4Hyp-3Hyp-COL1A1 [extracellular region]
3x4Hyp-COL1A1 [extracellular region]
3x4Hyp-3Hyp-5Hyl-COL1A1 [extracellular region]
3x4Hyp-GalHyl-COL1A1 [extracellular region]
GlcGalHyl-COL1A1 [extracellular region]
3x4Hyp-GlcGalHyl-COL1A1 [extracellular region]
Collagen alpha-1(I) chain [extracellular region]
5Hyl-COL1A1(162-953) [extracellular region]
3x4Hyp-3Hyp-COL1A1(162-953) [extracellular region]
3x4Hyp-COL1A1(954-1218) [extracellular region]
COL1A1(162-953) [extracellular region]
GlcGalHyl-COL1A1(954-1218) [extracellular region]
GalHyl-COL1A1(162-953) [extracellular region]
3x4Hyp-GlcGalHyl-COL1A1(954-1218) [extracellular region]
3x4Hyp-COL1A1(162-953) [extracellular region]
5Hyl-COL1A1(954-1218) [extracellular region]
3x4Hyp-3Hyp-5Hyl-COL1A1(162-953) [extracellular region]
GalHyl-COL1A1(954-1218) [extracellular region]
Inferred From
5Hyl-COL1A1(23-1464) [extracellular region]
(Homo sapiens)
Modified Residues
Name
(2S,5R)-5-hydroxylysine at unknown position
PsiMod Name
(2S,5R)-5-hydroxylysine
PsiMod Definition
A protein modification that effectively converts an L-lysine residue to 5-hydroxy-L-lysine.
Cross References
RefSeq
NP_445756.1
Ensembl
ENSRNOG00000003897
,
ENSRNOT00000005311
,
ENSRNOP00000005311
PRO
P02454
RGD
61817
PDB
3HR2
,
3HQV
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