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col28a1 [endoplasmic reticulum lumen]
Stable Identifier
R-DRE-2173021-2
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
endoplasmic reticulum lumen
Synonyms
5Hyl-COL28A1, C0H5W1
Locations in the PathwayBrowser
Expand all
Extracellular matrix organization (Danio rerio)
Collagen formation (Danio rerio)
Collagen biosynthesis and modifying enzymes (Danio rerio)
COLGALT1,COLGALT2 bind Lysyl hydroxylated collagen propeptides (Danio rerio)
COLGALT1,COLGALT2:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
Collagen chain trimerization (Danio rerio)
Association of procollagen type XVIII (Danio rerio)
Alpha-1(XXVIII) chains [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
C-linked procollagen type XXVIII trimer [endoplasmic reticulum lumen] (Danio rerio)
Alpha-1(XXVIII) chains [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
Galactosylation of collagen propeptide hydroxylysines by PLOD3 (Danio rerio)
PLOD3:Fe2+ dimer:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
Galactosylation of collagen propeptide hydroxylysines by procollagen galactosyltransferases 1, 2. (Danio rerio)
COLGALT1,COLGALT2:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides dissociate from Lysyl hydroxylases (Danio rerio)
Lysyl hydroxylases:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
PLOD3 binds Lysyl hydroxylated collagen propeptides (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
PLOD3:Fe2+ dimer:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
Procollagen lysyl hydroxylases convert collagen lysines to 5-hydroxylysines (Danio rerio)
Lysyl hydroxylases:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
Secretion of collagens (Danio rerio)
Collagens and tropocollagens:Serpin H1 [endoplasmic reticulum lumen] (Danio rerio)
Collagens and tropocollagens [endoplasmic reticulum lumen] (Danio rerio)
Non-fibrillar collagens [endoplasmic reticulum lumen] (Danio rerio)
C-linked procollagen type XXVIII trimer [endoplasmic reticulum lumen] (Danio rerio)
Alpha-1(XXVIII) chains [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1 [endoplasmic reticulum lumen] (Danio rerio)
External Reference Information
External Reference
UniProt:C0H5W1
Gene Names
col28a1
Reference Genes
BioGPS Gene:555428 col28a1
CTD Gene:555428 col28a1
ENSEMBL:ENSDARG00000077084
ENSEMBL:ENSDARG00000077084.6 col28a1
KEGG Gene (Danio rerio):555428 col28a1
Monarch:555428 col28a1
NCBI Gene:555428 col28a1
Reference Transcript
RefSeq:NM_001348047.1 col28a1
RefSeq:XM_021468067.1 col28a1
Other Identifiers
13069180
13278000
13278044
13278052
13287770
13287856
555428
A_15_P299616
CUST_19562_PI428451953
CUST_8314_PI428451958
DRER19860
DRER40646
Dr.17635.1.A1_at
ENSDART00000112618
ENSDART00000112808
ENSDART00000112936
GO:0004867
GO:0005576
GO:0005581
GO:0005615
GO:0007155
GO:0030312
GO:0031012
GO:0098772
GO:0110165
GT_Spec_XM_002665528.3_217295
MADDr01013401
MADDr01013402
OTTDART00000017573
OTTDART00000017627
OTTDART00000017628
OTTDART00000017635_1
OTTDART00000017635_2
XM_677928
XM_697670
ZV700S00002557
Participates
as a member of
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
Other forms of this molecule
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [extracellular region]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
col28a1 [endoplasmic reticulum lumen]
Inferred From
5Hyl-COL28A1 [endoplasmic reticulum lumen]
(Homo sapiens)
Modified Residues
Name
(2S,5R)-5-hydroxylysine at unknown position
PsiMod Name
(2S,5R)-5-hydroxylysine
PsiMod Definition
A protein modification that effectively converts an L-lysine residue to 5-hydroxy-L-lysine.
Cross References
RefSeq
XP_021323742.1
,
NP_001334976.1
ZFIN
ZDB-GENE-070705-84
Ensembl
ENSDARP00000102543
,
ENSDART00000112808
,
ENSDARG00000077084
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