Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
referenceDatabase 1 INSTANCE ReferenceDatabase StableIdentifier   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
PhysicalEntity stableIdentifier 1
ModifiedResidue stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Publication stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Regulation stableIdentifier 1
CellType stableIdentifier 1
Edge stableIdentifier 1
PathwayVertex stableIdentifier 1
Pathway stableIdentifier 1
SimpleEntity stableIdentifier 1
_Release stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
ReferenceEntity stableIdentifier 1
Affiliation stableIdentifier 1
ReferenceMolecule stableIdentifier 1
Figure stableIdentifier 1
FunctionalStatusType stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
CandidateSet stableIdentifier 1
Species stableIdentifier 1
ReferenceDatabase stableIdentifier 1
EntityCompartment stableIdentifier 1
EvidenceType stableIdentifier 1
Summation stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
FailedReaction stableIdentifier 1
Complex stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
GO_CellularComponent stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ReactionVertex stableIdentifier 1
TranslationalModification stableIdentifier 1
ReferenceIsoform stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
FunctionalStatus stableIdentifier 1
_Deleted stableIdentifier 1
SequenceOntology stableIdentifier 1
PsiMod stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
OpenSet stableIdentifier 1
ReferenceSequence stableIdentifier 1
BlackBoxEvent stableIdentifier 1
FrontPage stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
URL stableIdentifier 1
InstanceEdit stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
NegativeRegulation stableIdentifier 1
Taxon stableIdentifier 1
Depolymerisation stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
DatabaseObject stableIdentifier 1
PositiveRegulation stableIdentifier 1
ReplacedResidue stableIdentifier 1
Book stableIdentifier 1
LiteratureReference stableIdentifier 1
StableIdentifier stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
CatalystActivity stableIdentifier 1
EntitySet stableIdentifier 1
RegulationType stableIdentifier 1
FragmentModification stableIdentifier 1
DefinedSet stableIdentifier 1
Polymer stableIdentifier 1
Person stableIdentifier 1
Compartment stableIdentifier 1
OtherEntity stableIdentifier 1
ReferenceGroup stableIdentifier 1
Event stableIdentifier 1
EntityVertex stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
Polymerisation stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ExternalOntology stableIdentifier 1
Reaction stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
PathwayDiagram stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Disease stableIdentifier 1
Requirement stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Vertex stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.