Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase StableIdentifier   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
AbstractModifiedResidue stableIdentifier 1
Publication stableIdentifier 1
SimpleEntity stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ModifiedResidue stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
StableIdentifier stableIdentifier 1
SequenceOntology stableIdentifier 1
OtherEntity stableIdentifier 1
Polymer stableIdentifier 1
PsiMod stableIdentifier 1
DefinedSet stableIdentifier 1
CatalystActivity stableIdentifier 1
FrontPage stableIdentifier 1
Disease stableIdentifier 1
Figure stableIdentifier 1
Requirement stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
Polymerisation stableIdentifier 1
PathwayCoordinates stableIdentifier 1
EntityCompartment stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ControlledVocabulary stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReferenceDatabase stableIdentifier 1
ReferenceEntity stableIdentifier 1
EntitySet stableIdentifier 1
Regulation stableIdentifier 1
DatabaseObject stableIdentifier 1
CandidateSet stableIdentifier 1
FragmentModification stableIdentifier 1
FunctionalStatusType stableIdentifier 1
Vertex stableIdentifier 1
TranslationalModification stableIdentifier 1
Person stableIdentifier 1
FailedReaction stableIdentifier 1
_Deleted stableIdentifier 1
Species stableIdentifier 1
Taxon stableIdentifier 1
Affiliation stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Depolymerisation stableIdentifier 1
PositiveRegulation stableIdentifier 1
NegativeRegulation stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
CellType stableIdentifier 1
InstanceEdit stableIdentifier 1
OpenSet stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
ReferenceIsoform stableIdentifier 1
BlackBoxEvent stableIdentifier 1
LiteratureReference stableIdentifier 1
Event stableIdentifier 1
Complex stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Edge stableIdentifier 1
Reaction stableIdentifier 1
Book stableIdentifier 1
EvidenceType stableIdentifier 1
ReactionCoordinates stableIdentifier 1
PhysicalEntity stableIdentifier 1
EntityVertex stableIdentifier 1
Compartment stableIdentifier 1
URL stableIdentifier 1
ReferenceGroup stableIdentifier 1
Summation stableIdentifier 1
GO_CellularComponent stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
_Release stableIdentifier 1
Pathway stableIdentifier 1
ReferenceMolecule stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ExternalOntology stableIdentifier 1
PathwayVertex stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
ReferenceSequence stableIdentifier 1
ReplacedResidue stableIdentifier 1
FunctionalStatus stableIdentifier 1
PathwayDiagram stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ReactionVertex stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.