Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
ReferenceDatabase stableIdentifier 1
PositiveRegulation stableIdentifier 1
ReactionVertex stableIdentifier 1
ReferenceSequence stableIdentifier 1
ModifiedResidue stableIdentifier 1
Summation stableIdentifier 1
EntityCompartment stableIdentifier 1
EvidenceType stableIdentifier 1
Regulation stableIdentifier 1
EntityVertex stableIdentifier 1
DatabaseObject stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Publication stableIdentifier 1
NegativeRegulation stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
PsiMod stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
FailedReaction stableIdentifier 1
Taxon stableIdentifier 1
EntitySet stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
SequenceOntology stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Disease stableIdentifier 1
CandidateSet stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
FunctionalStatusType stableIdentifier 1
DefinedSet stableIdentifier 1
CellType stableIdentifier 1
OpenSet stableIdentifier 1
Vertex stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
OtherEntity stableIdentifier 1
_Release stableIdentifier 1
Complex stableIdentifier 1
FrontPage stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
PathwayCoordinates stableIdentifier 1
TranslationalModification stableIdentifier 1
_Deleted stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ReferenceGroup stableIdentifier 1
PathwayDiagram stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Pathway stableIdentifier 1
StableIdentifier stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
Book stableIdentifier 1
ReplacedResidue stableIdentifier 1
LiteratureReference stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Polymerisation stableIdentifier 1
Affiliation stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
GO_CellularComponent stableIdentifier 1
FunctionalStatus stableIdentifier 1
Figure stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
FragmentModification stableIdentifier 1
InstanceEdit stableIdentifier 1
Person stableIdentifier 1
Event stableIdentifier 1
URL stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
Reaction stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceMolecule stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Edge stableIdentifier 1
SimpleEntity stableIdentifier 1
PathwayVertex stableIdentifier 1
ExternalOntology stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
CatalystActivity stableIdentifier 1
Depolymerisation stableIdentifier 1
PhysicalEntity stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Polymer stableIdentifier 1
Species stableIdentifier 1
Requirement stableIdentifier 1
Compartment stableIdentifier 1
ReferenceIsoform stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.