Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
GroupModifiedResidue stableIdentifier 1
PhysicalEntity stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Reaction stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
Disease stableIdentifier 1
Taxon stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
NegativeRegulation stableIdentifier 1
PsiMod stableIdentifier 1
SimpleEntity stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
EvidenceType stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
Requirement stableIdentifier 1
Book stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
ReactionCoordinates stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ReplacedResidue stableIdentifier 1
TranslationalModification stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
ModifiedResidue stableIdentifier 1
ExternalOntology stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Person stableIdentifier 1
FailedReaction stableIdentifier 1
EntityCompartment stableIdentifier 1
Affiliation stableIdentifier 1
ReferenceMolecule stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Complex stableIdentifier 1
Pathway stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
PathwayDiagram stableIdentifier 1
ReferenceSequence stableIdentifier 1
Edge stableIdentifier 1
Vertex stableIdentifier 1
CandidateSet stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Regulation stableIdentifier 1
ReferenceDatabase stableIdentifier 1
Species stableIdentifier 1
Polymer stableIdentifier 1
EntityVertex stableIdentifier 1
PathwayCoordinates stableIdentifier 1
FunctionalStatus stableIdentifier 1
CatalystActivity stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
ControlledVocabulary stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
FragmentModification stableIdentifier 1
EntitySet stableIdentifier 1
Summation stableIdentifier 1
ReactionVertex stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
CellType stableIdentifier 1
URL stableIdentifier 1
OpenSet stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
ReferenceEntity stableIdentifier 1
FrontPage stableIdentifier 1
Polymerisation stableIdentifier 1
_Release stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
ReferenceGroup stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
ReferenceIsoform stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
PathwayVertex stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
_Deleted stableIdentifier 1
FunctionalStatusType stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Depolymerisation stableIdentifier 1
SequenceOntology stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
StableIdentifier stableIdentifier 1
DefinedSet stableIdentifier 1
Compartment stableIdentifier 1
OtherEntity stableIdentifier 1
Publication stableIdentifier 1
InstanceEdit stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
LiteratureReference stableIdentifier 1
Figure stableIdentifier 1
DatabaseObject stableIdentifier 1
Event stableIdentifier 1
PositiveRegulation stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.