Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
LiteratureReference stableIdentifier 1
Vertex stableIdentifier 1
ReactionVertex stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ReplacedResidue stableIdentifier 1
PsiMod stableIdentifier 1
Requirement stableIdentifier 1
DefinedSet stableIdentifier 1
DatabaseObject stableIdentifier 1
ReferenceGroup stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
_Release stableIdentifier 1
ReferenceDatabase stableIdentifier 1
_Deleted stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
GO_CellularComponent stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
PhysicalEntity stableIdentifier 1
PositiveRegulation stableIdentifier 1
CellType stableIdentifier 1
Taxon stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Event stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
FrontPage stableIdentifier 1
Edge stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
PathwayDiagram stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReactionCoordinates stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
EntityVertex stableIdentifier 1
Reaction stableIdentifier 1
Figure stableIdentifier 1
InstanceEdit stableIdentifier 1
ReferenceMolecule stableIdentifier 1
URL stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
SequenceOntology stableIdentifier 1
Publication stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
PathwayCoordinates stableIdentifier 1
OtherEntity stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
FailedReaction stableIdentifier 1
Polymer stableIdentifier 1
ReferenceSequence stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
SimpleEntity stableIdentifier 1
FunctionalStatus stableIdentifier 1
ModifiedResidue stableIdentifier 1
Affiliation stableIdentifier 1
FragmentModification stableIdentifier 1
Compartment stableIdentifier 1
Complex stableIdentifier 1
Polymerisation stableIdentifier 1
CandidateSet stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
BlackBoxEvent stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
EntitySet stableIdentifier 1
ControlledVocabulary stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
OpenSet stableIdentifier 1
ReferenceIsoform stableIdentifier 1
Regulation stableIdentifier 1
NegativeRegulation stableIdentifier 1
StableIdentifier stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Person stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
Book stableIdentifier 1
Disease stableIdentifier 1
Pathway stableIdentifier 1
PathwayVertex stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Species stableIdentifier 1
EntityCompartment stableIdentifier 1
TranslationalModification stableIdentifier 1
EvidenceType stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
Summation stableIdentifier 1
Depolymerisation stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
ExternalOntology stableIdentifier 1
CatalystActivity stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.