Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
GO_CellularComponent stableIdentifier 1
Complex stableIdentifier 1
Depolymerisation stableIdentifier 1
FragmentModification stableIdentifier 1
Publication stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
Compartment stableIdentifier 1
OpenSet stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Taxon stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Regulation stableIdentifier 1
Pathway stableIdentifier 1
NegativeRegulation stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
EntityVertex stableIdentifier 1
FailedReaction stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
ReplacedResidue stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Requirement stableIdentifier 1
Summation stableIdentifier 1
EntitySet stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
_Deleted stableIdentifier 1
ReferenceEntity stableIdentifier 1
_Release stableIdentifier 1
ReferenceMolecule stableIdentifier 1
Polymerisation stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
EntityCompartment stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
PathwayDiagram stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
TranslationalModification stableIdentifier 1
PsiMod stableIdentifier 1
Vertex stableIdentifier 1
SimpleEntity stableIdentifier 1
ReferenceGroup stableIdentifier 1
StableIdentifier stableIdentifier 1
FunctionalStatusType stableIdentifier 1
Reaction stableIdentifier 1
CandidateSet stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
Affiliation stableIdentifier 1
InstanceEdit stableIdentifier 1
CatalystActivity stableIdentifier 1
ReferenceSequence stableIdentifier 1
PositiveRegulation stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
DatabaseObject stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
URL stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Disease stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
Polymer stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
Figure stableIdentifier 1
Edge stableIdentifier 1
PhysicalEntity stableIdentifier 1
CellType stableIdentifier 1
Species stableIdentifier 1
ReactionVertex stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
ReferenceIsoform stableIdentifier 1
DefinedSet stableIdentifier 1
SequenceOntology stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Person stableIdentifier 1
FunctionalStatus stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Event stableIdentifier 1
Book stableIdentifier 1
EvidenceType stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceDatabase stableIdentifier 1
ModifiedResidue stableIdentifier 1
LiteratureReference stableIdentifier 1
FrontPage stableIdentifier 1
OtherEntity stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
ExternalOntology stableIdentifier 1
PathwayVertex stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
CrosslinkedResidue stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.