Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
InterChainCrosslinkedResidue stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
ProteinDrug stableIdentifier 1
EntityCompartment stableIdentifier 1
Regulation stableIdentifier 1
FunctionalStatus stableIdentifier 1
Polymerisation stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
FrontPage stableIdentifier 1
PathwayVertex stableIdentifier 1
DefinedSet stableIdentifier 1
Vertex stableIdentifier 1
Pathway stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ControlledVocabulary stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
PhysicalEntity stableIdentifier 1
ReactionVertex stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
Compartment stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
PositiveRegulation stableIdentifier 1
Polymer stableIdentifier 1
ModifiedResidue stableIdentifier 1
ChemicalDrug stableIdentifier 1
Taxon stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
DatabaseObject stableIdentifier 1
BlackBoxEvent stableIdentifier 1
SequenceOntology stableIdentifier 1
LiteratureReference stableIdentifier 1
_Release stableIdentifier 1
Reaction stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
FragmentModification stableIdentifier 1
Complex stableIdentifier 1
ReferenceDatabase stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
ReferenceMolecule stableIdentifier 1
NegativeRegulation stableIdentifier 1
CatalystActivity stableIdentifier 1
Figure stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
PsiMod stableIdentifier 1
PathwayCoordinates stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
PathwayDiagram stableIdentifier 1
Depolymerisation stableIdentifier 1
EvidenceType stableIdentifier 1
Drug stableIdentifier 1
CellType stableIdentifier 1
Summation stableIdentifier 1
Event stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Person stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
Requirement stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Edge stableIdentifier 1
Species stableIdentifier 1
URL stableIdentifier 1
ReferenceSequence stableIdentifier 1
OpenSet stableIdentifier 1
Disease stableIdentifier 1
InstanceEdit stableIdentifier 1
TranslationalModification stableIdentifier 1
ReferenceIsoform stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
StableIdentifier stableIdentifier 1
Publication stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
_Deleted stableIdentifier 1
CandidateSet stableIdentifier 1
RNADrug stableIdentifier 1
EntitySet stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
FailedReaction stableIdentifier 1
ExternalOntology stableIdentifier 1
Affiliation stableIdentifier 1
ReplacedResidue stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
ReactionCoordinates stableIdentifier 1
EntityVertex stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
OtherEntity stableIdentifier 1
SimpleEntity stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ReferenceGroup stableIdentifier 1
Book stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.