Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
EntityWithAccessionedSequence stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
ReferenceSequence stableIdentifier 1
NegativeRegulation stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Depolymerisation stableIdentifier 1
OpenSet stableIdentifier 1
Reaction stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
Regulation stableIdentifier 1
ReferenceMolecule stableIdentifier 1
CellType stableIdentifier 1
Publication stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Polymer stableIdentifier 1
PsiMod stableIdentifier 1
Species stableIdentifier 1
Compartment stableIdentifier 1
Person stableIdentifier 1
ReferenceEntity stableIdentifier 1
Requirement stableIdentifier 1
EntityVertex stableIdentifier 1
FrontPage stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Vertex stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Pathway stableIdentifier 1
PositiveRegulation stableIdentifier 1
InstanceEdit stableIdentifier 1
ReferenceGroup stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Disease stableIdentifier 1
FunctionalStatusType stableIdentifier 1
PathwayDiagram stableIdentifier 1
Edge stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ModifiedResidue stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
TranslationalModification stableIdentifier 1
CatalystActivity stableIdentifier 1
ReactionVertex stableIdentifier 1
CandidateSet stableIdentifier 1
ReferenceIsoform stableIdentifier 1
BlackBoxEvent stableIdentifier 1
FunctionalStatus stableIdentifier 1
LiteratureReference stableIdentifier 1
DefinedSet stableIdentifier 1
PathwayVertex stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
Complex stableIdentifier 1
SimpleEntity stableIdentifier 1
PathwayCoordinates stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Polymerisation stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
_Release stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Summation stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
EvidenceType stableIdentifier 1
Taxon stableIdentifier 1
ReplacedResidue stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
Figure stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
ReferenceDatabase stableIdentifier 1
Affiliation stableIdentifier 1
FragmentModification stableIdentifier 1
SequenceOntology stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
URL stableIdentifier 1
PhysicalEntity stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
ReactionCoordinates stableIdentifier 1
DatabaseObject stableIdentifier 1
Book stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
EntityCompartment stableIdentifier 1
OtherEntity stableIdentifier 1
Event stableIdentifier 1
_Deleted stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
StableIdentifier stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ExternalOntology stableIdentifier 1
EntitySet stableIdentifier 1
FailedReaction stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.