Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
ReferenceGroup stableIdentifier 1
PhysicalEntity stableIdentifier 1
LiteratureReference stableIdentifier 1
BlackBoxEvent stableIdentifier 1
CatalystActivity stableIdentifier 1
ReferenceEntity stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
Book stableIdentifier 1
ReferenceMolecule stableIdentifier 1
StableIdentifier stableIdentifier 1
OtherEntity stableIdentifier 1
Taxon stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Summation stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Vertex stableIdentifier 1
ReferenceDatabase stableIdentifier 1
PsiMod stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
DefinedSet stableIdentifier 1
Publication stableIdentifier 1
ControlledVocabulary stableIdentifier 1
EntityVertex stableIdentifier 1
EvidenceType stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
SimpleEntity stableIdentifier 1
ReferenceSequence stableIdentifier 1
PositiveRegulation stableIdentifier 1
ModifiedResidue stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ExternalOntology stableIdentifier 1
Polymer stableIdentifier 1
FailedReaction stableIdentifier 1
ReplacedResidue stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Edge stableIdentifier 1
EntityCompartment stableIdentifier 1
Pathway stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
FrontPage stableIdentifier 1
PathwayVertex stableIdentifier 1
FunctionalStatusType stableIdentifier 1
InstanceEdit stableIdentifier 1
URL stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Complex stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
Event stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
Regulation stableIdentifier 1
NegativeRegulation stableIdentifier 1
FunctionalStatus stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Polymerisation stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
OpenSet stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
Reaction stableIdentifier 1
Species stableIdentifier 1
CellType stableIdentifier 1
Compartment stableIdentifier 1
DatabaseObject stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Figure stableIdentifier 1
EntitySet stableIdentifier 1
FragmentModification stableIdentifier 1
SequenceOntology stableIdentifier 1
PathwayDiagram stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
ReferenceIsoform stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
TranslationalModification stableIdentifier 1
PathwayCoordinates stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
Disease stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Affiliation stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReactionVertex stableIdentifier 1
GO_CellularComponent stableIdentifier 1
_Deleted stableIdentifier 1
Person stableIdentifier 1
CandidateSet stableIdentifier 1
_Release stableIdentifier 1
Depolymerisation stableIdentifier 1
Requirement stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.