Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase StableIdentifier   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
EntityVertex stableIdentifier 1
Requirement stableIdentifier 1
Edge stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
ReactionVertex stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
CatalystActivity stableIdentifier 1
PathwayDiagram stableIdentifier 1
_Release stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Book stableIdentifier 1
OtherEntity stableIdentifier 1
ReferenceEntity stableIdentifier 1
Compartment stableIdentifier 1
SequenceOntology stableIdentifier 1
PhysicalEntity stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Polymer stableIdentifier 1
FunctionalStatusType stableIdentifier 1
PsiMod stableIdentifier 1
ReactionCoordinates stableIdentifier 1
Person stableIdentifier 1
SimpleEntity stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
ReferenceGroup stableIdentifier 1
BlackBoxEvent stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
TranslationalModification stableIdentifier 1
ReferenceDatabase stableIdentifier 1
Reaction stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
Summation stableIdentifier 1
Pathway stableIdentifier 1
EntitySet stableIdentifier 1
FragmentModification stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
StableIdentifier stableIdentifier 1
OpenSet stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
PositiveRegulation stableIdentifier 1
Vertex stableIdentifier 1
NegativeRegulation stableIdentifier 1
EntityCompartment stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Complex stableIdentifier 1
ExternalOntology stableIdentifier 1
Depolymerisation stableIdentifier 1
ModifiedResidue stableIdentifier 1
CellType stableIdentifier 1
ReferenceIsoform stableIdentifier 1
_Deleted stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ReplacedResidue stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Affiliation stableIdentifier 1
GO_CellularComponent stableIdentifier 1
Event stableIdentifier 1
Taxon stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
Disease stableIdentifier 1
URL stableIdentifier 1
FunctionalStatus stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
EvidenceType stableIdentifier 1
PathwayVertex stableIdentifier 1
Species stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
ControlledVocabulary stableIdentifier 1
CandidateSet stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
LiteratureReference stableIdentifier 1
ReferenceSequence stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Figure stableIdentifier 1
FrontPage stableIdentifier 1
ReferenceMolecule stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
FailedReaction stableIdentifier 1
PathwayCoordinates stableIdentifier 1
DefinedSet stableIdentifier 1
DatabaseObject stableIdentifier 1
Polymerisation stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Regulation stableIdentifier 1
Publication stableIdentifier 1
InstanceEdit stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.