Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase StableIdentifier   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Summation stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
_Deleted stableIdentifier 1
Vertex stableIdentifier 1
FunctionalStatusType stableIdentifier 1
Edge stableIdentifier 1
Publication stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
PathwayDiagram stableIdentifier 1
PathwayVertex stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
Person stableIdentifier 1
Species stableIdentifier 1
CellType stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
GO_CellularComponent stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
FrontPage stableIdentifier 1
ReferenceGroup stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Requirement stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
Pathway stableIdentifier 1
CandidateSet stableIdentifier 1
Depolymerisation stableIdentifier 1
Compartment stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
StableIdentifier stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Disease stableIdentifier 1
ModifiedResidue stableIdentifier 1
ReactionCoordinates stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Regulation stableIdentifier 1
LiteratureReference stableIdentifier 1
TranslationalModification stableIdentifier 1
ReferenceEntity stableIdentifier 1
FailedReaction stableIdentifier 1
Polymerisation stableIdentifier 1
OtherEntity stableIdentifier 1
InstanceEdit stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
PositiveRegulation stableIdentifier 1
PhysicalEntity stableIdentifier 1
FunctionalStatus stableIdentifier 1
URL stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
SequenceOntology stableIdentifier 1
EvidenceType stableIdentifier 1
ReactionVertex stableIdentifier 1
CatalystActivity stableIdentifier 1
ReplacedResidue stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
EntityVertex stableIdentifier 1
OpenSet stableIdentifier 1
PsiMod stableIdentifier 1
Complex stableIdentifier 1
FragmentModification stableIdentifier 1
EntityCompartment stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
PathwayCoordinates stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Affiliation stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
ReferenceMolecule stableIdentifier 1
Book stableIdentifier 1
DatabaseObject stableIdentifier 1
ExternalOntology stableIdentifier 1
ReferenceIsoform stableIdentifier 1
ReferenceDatabase stableIdentifier 1
EntitySet stableIdentifier 1
Figure stableIdentifier 1
SimpleEntity stableIdentifier 1
NegativeRegulation stableIdentifier 1
Reaction stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
Taxon stableIdentifier 1
ReferenceSequence stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Polymer stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Event stableIdentifier 1
_Release stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
DefinedSet stableIdentifier 1
ReactionlikeEvent stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.