Reactome: A Curated Pathway Database

Attributes of class 'Species'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
abbreviation 1 TEXT N/A Species   TEXT
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier Taxon   INTEGER(10) UNSIGNED
figure + INSTANCE Figure Species   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A Taxon ANY varchar(255)
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
superTaxon 1 INSTANCE Taxon Taxon   INTEGER(10) UNSIGNED

Referers of class 'Species' instances

Class name Attribute name Cardinality
Species superTaxon 1
Taxon superTaxon 1
Polymerisation species +
EntityWithAccessionedSequence species 1
EntitySet species +
VertexSearchableTerm species 1
Event species +
DefinedSet species +
ReferenceGeneProduct species 1
Reaction species +
Pathway species +
Polymer species +
ReferenceRNASequence species 1
ReferenceDNASequence species 1
ReactionlikeEvent species +
CandidateSet species +
SimpleEntity species 1
ReferenceIsoform species 1
BlackBoxEvent species +
ReferenceSequence species 1
Complex species +
GenomeEncodedEntity species 1
Depolymerisation species +
FailedReaction species +
OpenSet species +
Polymerisation relatedSpecies +
BlackBoxEvent relatedSpecies +
Event relatedSpecies +
DefinedSet relatedSpecies +
EntitySet relatedSpecies +
Complex relatedSpecies +
FailedReaction relatedSpecies +
Depolymerisation relatedSpecies +
Pathway relatedSpecies +
Reaction relatedSpecies +
CandidateSet relatedSpecies +
OpenSet relatedSpecies +
ReactionlikeEvent relatedSpecies +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.