Reactome: A Curated Pathway Database

Attributes of class 'Polymer'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A Polymer   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A Polymer   TEXT
maxUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
minUnitCount 1 INTEGER N/A Polymer   INTEGER(10)
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
repeatedUnit + INSTANCE PhysicalEntity Polymer ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species Polymer   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A Polymer   TEXT

Referers of class 'Polymer' instances

Class name Attribute name Cardinality
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
CandidateSet inferredTo +
SimpleEntity inferredTo +
OtherEntity inferredTo +
PhysicalEntity inferredTo +
DefinedSet inferredTo +
Complex inferredTo +
OpenSet inferredTo +
EntitySet inferredTo +
Polymer inferredTo +
GenomeEncodedEntity inferredTo +
EntityWithAccessionedSequence inferredTo +
ReactionlikeEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
ConcurrentEventSet focusEntity +
_Deleted replacementInstances +
CatalystActivity activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
ReactionlikeEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
OtherEntity inferredFrom +
PhysicalEntity inferredFrom +
CandidateSet inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
Complex inferredFrom +
EntityWithAccessionedSequence inferredFrom +
GenomeEncodedEntity inferredFrom +
Polymer inferredFrom +
OpenSet inferredFrom +
EntitySet inferredFrom +
Regulation regulator 1
NegativeRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
Polymerisation output +
Reaction output +
FailedReaction output +
BlackBoxEvent output +
Depolymerisation output +
ReactionlikeEvent output +
CrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
InterChainCrosslinkedResidue modification 1
Complex hasComponent +
CandidateSet hasCandidate +
VertexSearchableTerm termProvider +
Polymer repeatedUnit +
ReactionlikeEvent input +
Depolymerisation input +
Polymerisation input +
Reaction input +
FailedReaction input +
BlackBoxEvent input +
EntityVertex representedInstance 1
DefinedSet hasMember +
EntitySet hasMember +
OpenSet hasMember +
CandidateSet hasMember +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.