Reactome: A Curated Pathway Database

Attributes of class 'OtherEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'OtherEntity' instances

Class name Attribute name Cardinality
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
VertexSearchableTerm termProvider +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
OpenSet hasMember +
ReactionlikeEvent input +
FailedReaction input +
Depolymerisation input +
Reaction input +
BlackBoxEvent input +
Polymerisation input +
_Deleted replacementInstances +
NegativeRegulation regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Complex inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OtherEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
PhysicalEntity inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
Polymer inferredFrom +
EntitySet inferredFrom +
OpenSet inferredFrom +
CandidateSet inferredFrom +
ConcurrentEventSet focusEntity +
CandidateSet hasCandidate +
ReactionlikeEvent output +
FailedReaction output +
Reaction output +
BlackBoxEvent output +
Depolymerisation output +
Polymerisation output +
EntityVertex representedInstance 1
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
Complex hasComponent +
Complex entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
DefinedSet inferredTo +
SimpleEntity inferredTo +
PhysicalEntity inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
OpenSet inferredTo +
CandidateSet inferredTo +
Polymer inferredTo +
EntitySet inferredTo +
Requirement activeUnit +
PositiveRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Regulation activeUnit +
Polymer repeatedUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.