Reactome: A Curated Pathway Database

Attributes of class 'OpenSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
referenceEntity 1 INSTANCE ReferenceEntity OpenSet ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'OpenSet' instances

Class name Attribute name Cardinality
VertexSearchableTerm termProvider +
EntityVertex representedInstance 1
NegativeRegulation activeUnit +
Regulation activeUnit +
Requirement activeUnit +
PositiveRegulation activeUnit +
CatalystActivity activeUnit +
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Polymer repeatedUnit +
Regulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
Requirement regulator 1
Complex hasComponent +
SimpleEntity inferredTo +
DefinedSet inferredTo +
OtherEntity inferredTo +
EntitySet inferredTo +
GenomeEncodedEntity inferredTo +
Polymer inferredTo +
PhysicalEntity inferredTo +
Complex inferredTo +
OpenSet inferredTo +
EntityWithAccessionedSequence inferredTo +
CandidateSet inferredTo +
OpenSet hasMember +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OpenSet inferredFrom +
PhysicalEntity inferredFrom +
Complex inferredFrom +
Polymer inferredFrom +
DefinedSet inferredFrom +
OtherEntity inferredFrom +
EntitySet inferredFrom +
GenomeEncodedEntity inferredFrom +
SimpleEntity inferredFrom +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Depolymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
Depolymerisation input +
FailedReaction input +
ReactionlikeEvent input +
Reaction input +
Polymerisation input +
BlackBoxEvent input +
_Deleted replacementInstances +
ConcurrentEventSet focusEntity +
Polymerisation output +
BlackBoxEvent output +
Reaction output +
Depolymerisation output +
ReactionlikeEvent output +
FailedReaction output +
CandidateSet hasCandidate +
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.