Reactome: A Curated Pathway Database

Attributes of class 'OpenSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
referenceEntity 1 INSTANCE ReferenceEntity OpenSet ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'OpenSet' instances

Class name Attribute name Cardinality
Polymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
Reaction entityOnOtherCell +
Complex entityOnOtherCell +
Depolymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
EntityWithAccessionedSequence inferredTo +
PhysicalEntity inferredTo +
OpenSet inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
CandidateSet inferredTo +
DefinedSet inferredTo +
SimpleEntity inferredTo +
Polymer inferredTo +
EntitySet inferredTo +
Complex inferredTo +
CatalystActivity activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
_Deleted replacementInstances +
EntitySet hasMember +
OpenSet hasMember +
CandidateSet hasMember +
DefinedSet hasMember +
Polymer repeatedUnit +
Reaction input +
ReactionlikeEvent input +
BlackBoxEvent input +
Depolymerisation input +
FailedReaction input +
Polymerisation input +
PositiveRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
ConcurrentEventSet focusEntity +
IntraChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
PhysicalEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
GenomeEncodedEntity inferredFrom +
CandidateSet inferredFrom +
OtherEntity inferredFrom +
OpenSet inferredFrom +
EntitySet inferredFrom +
Polymer inferredFrom +
Complex inferredFrom +
FailedReaction output +
Polymerisation output +
BlackBoxEvent output +
ReactionlikeEvent output +
Depolymerisation output +
Reaction output +
Complex hasComponent +
CandidateSet hasCandidate +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
VertexSearchableTerm termProvider +
EntityVertex representedInstance 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.