Reactome: A Curated Pathway Database

Attributes of class 'LiteratureReference'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person Publication   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
journal 1 TEXT N/A LiteratureReference   varchar(255)
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
pages 1 TEXT N/A LiteratureReference   TEXT
pubMedIdentifier 1 INTEGER N/A LiteratureReference ALL INTEGER(10)
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
title 1 TEXT N/A Publication   TEXT
volume 1 INTEGER N/A LiteratureReference   INTEGER(10)
year 1 INTEGER N/A LiteratureReference   INTEGER(10)

Referers of class 'LiteratureReference' instances

Class name Attribute name Cardinality
Polymer literatureReference +
OtherEntity literatureReference +
EntitySet literatureReference +
Complex literatureReference +
Requirement literatureReference +
CandidateSet literatureReference +
EntityWithAccessionedSequence literatureReference +
Pathway literatureReference +
Depolymerisation literatureReference +
BlackBoxEvent literatureReference +
SimpleEntity literatureReference +
Summation literatureReference +
OpenSet literatureReference +
FailedReaction literatureReference +
Polymerisation literatureReference +
DefinedSet literatureReference +
Regulation literatureReference +
PositiveRegulation literatureReference +
Event literatureReference +
Reaction literatureReference +
GenomeEncodedEntity literatureReference +
NegativeRegulation literatureReference +
PhysicalEntity literatureReference +
ReactionlikeEvent literatureReference +
CatalystActivity literatureReference +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.