Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
NegativeRegulation edited +
Reaction edited +
Polymerisation edited +
PositiveRegulation edited +
EntitySet edited +
EntityWithAccessionedSequence edited +
Complex edited +
CandidateSet edited +
OpenSet edited +
Depolymerisation edited +
ReactionlikeEvent edited +
Event edited +
GenomeEncodedEntity edited +
Polymer edited +
OtherEntity edited +
SimpleEntity edited +
Regulation edited +
PhysicalEntity edited +
FailedReaction edited +
DefinedSet edited +
BlackBoxEvent edited +
Pathway edited +
Requirement edited +
Depolymerisation authored +
EntitySet authored 1
EntityWithAccessionedSequence authored 1
OpenSet authored 1
Complex authored 1
CandidateSet authored 1
Polymerisation authored +
PositiveRegulation authored 1
NegativeRegulation authored 1
Reaction authored +
DefinedSet authored 1
FailedReaction authored +
Requirement authored 1
BlackBoxEvent authored +
Pathway authored +
PhysicalEntity authored 1
Polymer authored 1
GenomeEncodedEntity authored 1
Regulation authored 1
SimpleEntity authored 1
OtherEntity authored 1
Event authored +
ReactionlikeEvent authored +
EntitySet revised +
EntityWithAccessionedSequence revised +
OpenSet revised +
Complex revised +
CandidateSet revised +
Depolymerisation revised +
NegativeRegulation revised +
Reaction revised +
Polymerisation revised +
PositiveRegulation revised +
PhysicalEntity revised +
DefinedSet revised +
FailedReaction revised +
Requirement revised +
Pathway revised +
BlackBoxEvent revised +
Event revised +
ReactionlikeEvent revised +
Polymer revised +
GenomeEncodedEntity revised +
Regulation revised +
SimpleEntity revised +
OtherEntity revised +
ReplacedResidue modified +
Reaction modified +
FrontPage modified +
Polymerisation modified +
GO_CellularComponent modified +
Disease modified +
PathwayCoordinates modified +
GO_BiologicalProcess modified +
_Deleted modified +
Complex modified +
EntityVertex modified +
FragmentInsertionModification modified +
DeletedControlledVocabulary modified +
ReferenceIsoform modified +
GenomeEncodedEntity modified +
ReferenceRNASequence modified +
OtherEntity modified +
Affiliation modified +
VertexSearchableTerm modified +
InterChainCrosslinkedResidue modified +
NegativeRegulation modified +
StableIdentifier modified +
DatabaseObject modified +
CellType modified +
GeneticallyModifiedResidue modified +
CatalystActivity modified +
ReferenceDatabase modified +
Person modified +
PathwayDiagramItem modified +
_Release modified +
CandidateSet modified +
OpenSet modified +
IntraChainCrosslinkedResidue modified +
Species modified +
Depolymerisation modified +
InstanceEdit modified +
PsiMod modified +
ReferenceEntity modified +
PhysicalEntity modified +
FailedReaction modified +
ConcurrentEventSet modified +
DefinedSet modified +
Pathway modified +
GroupModifiedResidue modified +
SequenceOntology modified +
Publication modified +
Compartment modified +
Book modified +
ReferenceGeneProduct modified +
PositiveRegulation modified +
EvidenceType modified +
PathwayDiagram modified +
ReferenceDNASequence modified +
LiteratureReference modified +
Edge modified +
ReferenceSequence modified +
ReactionlikeEvent modified +
Event modified +
EntityFunctionalStatus modified +
URL modified +
GO_MolecularFunction modified +
TranslationalModification modified +
Polymer modified +
ControlledVocabulary modified +
ReferenceGroup modified +
ExternalOntology modified +
Requirement modified +
FunctionalStatusType modified +
FragmentReplacedModification modified +
_AttributeValueBeforeChange modified +
Summation modified +
ReactionCoordinates modified +
PathwayVertex modified +
Figure modified +
EntityWithAccessionedSequence modified +
EntitySet modified +
FragmentModification modified +
ReactionVertex modified +
Taxon modified +
FragmentDeletionModification modified +
FunctionalStatus modified +
DatabaseIdentifier modified +
EntityCompartment modified +
ReferenceMolecule modified +
_InstanceBeforeChange modified +
ModifiedResidue modified +
CrosslinkedResidue modified +
Vertex modified +
AbstractModifiedResidue modified +
SimpleEntity modified +
Regulation modified +
BlackBoxEvent modified +
URL created 1
ReactionlikeEvent created 1
EntityFunctionalStatus created 1
Event created 1
ControlledVocabulary created 1
ReferenceGroup created 1
GO_MolecularFunction created 1
Polymer created 1
TranslationalModification created 1
ExternalOntology created 1
Requirement created 1
Compartment created 1
SequenceOntology created 1
Publication created 1
ReferenceGeneProduct created 1
PositiveRegulation created 1
EvidenceType created 1
Book created 1
PathwayDiagram created 1
ReferenceDNASequence created 1
ReferenceSequence created 1
Edge created 1
LiteratureReference created 1
CrosslinkedResidue created 1
ReferenceMolecule created 1
_InstanceBeforeChange created 1
ModifiedResidue created 1
Regulation created 1
SimpleEntity created 1
Vertex created 1
AbstractModifiedResidue created 1
BlackBoxEvent created 1
PathwayVertex created 1
ReactionCoordinates created 1
FunctionalStatusType created 1
FragmentReplacedModification created 1
_AttributeValueBeforeChange created 1
Summation created 1
Figure created 1
ReactionVertex created 1
Taxon created 1
FunctionalStatus created 1
FragmentDeletionModification created 1
FragmentModification created 1
EntitySet created 1
EntityWithAccessionedSequence created 1
DatabaseIdentifier created 1
EntityCompartment created 1
ReferenceIsoform created 1
OtherEntity created 1
GenomeEncodedEntity created 1
ReferenceRNASequence created 1
Affiliation created 1
VertexSearchableTerm created 1
ReplacedResidue created 1
FrontPage created 1
Reaction created 1
Disease created 1
PathwayCoordinates created 1
GO_BiologicalProcess created 1
_Deleted created 1
Polymerisation created 1
GO_CellularComponent created 1
EntityVertex created 1
Complex created 1
DeletedControlledVocabulary created 1
FragmentInsertionModification created 1
PsiMod created 1
InstanceEdit created 1
ReferenceEntity created 1
PhysicalEntity created 1
Pathway created 1
GroupModifiedResidue created 1
ConcurrentEventSet created 1
FailedReaction created 1
DefinedSet created 1
GeneticallyModifiedResidue created 1
DatabaseObject created 1
StableIdentifier created 1
CellType created 1
CatalystActivity created 1
InterChainCrosslinkedResidue created 1
NegativeRegulation created 1
Person created 1
ReferenceDatabase created 1
CandidateSet created 1
OpenSet created 1
PathwayDiagramItem created 1
_Release created 1
IntraChainCrosslinkedResidue created 1
Species created 1
Depolymerisation created 1
Polymerisation reviewed +
PositiveRegulation reviewed +
Reaction reviewed +
NegativeRegulation reviewed +
Depolymerisation reviewed +
EntitySet reviewed +
EntityWithAccessionedSequence reviewed +
OpenSet reviewed +
Complex reviewed +
CandidateSet reviewed +
Polymer reviewed +
GenomeEncodedEntity reviewed +
SimpleEntity reviewed +
Regulation reviewed +
OtherEntity reviewed +
Event reviewed +
ReactionlikeEvent reviewed +
DefinedSet reviewed +
FailedReaction reviewed +
Requirement reviewed +
BlackBoxEvent reviewed +
Pathway reviewed +
PhysicalEntity reviewed +
_InstanceBeforeChange instanceEdit 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.