Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
DefinedSet authored 1
EntityWithAccessionedSequence authored 1
EntitySet authored 1
Pathway authored +
Regulation authored 1
Event authored +
Depolymerisation authored +
GenomeEncodedEntity authored 1
Complex authored 1
OpenSet authored 1
NegativeRegulation authored 1
Polymer authored 1
PositiveRegulation authored 1
CandidateSet authored 1
BlackBoxEvent authored +
PhysicalEntity authored 1
Reaction authored +
Requirement authored 1
SimpleEntity authored 1
Polymerisation authored +
ReactionlikeEvent authored +
FailedReaction authored +
OtherEntity authored 1
Affiliation modified +
Requirement modified +
ReferenceEntity modified +
Species modified +
CandidateSet modified +
PositiveRegulation modified +
Figure modified +
InterChainCrosslinkedResidue modified +
DatabaseIdentifier modified +
DatabaseObject modified +
Event modified +
Regulation modified +
_Release modified +
ModifiedResidue modified +
ReferenceRNASequence modified +
EntitySet modified +
InstanceEdit modified +
_InstanceBeforeChange modified +
DefinedSet modified +
DeletedControlledVocabulary modified +
SimpleEntity modified +
Compartment modified +
EntityVertex modified +
ControlledVocabulary modified +
Summation modified +
ReferenceGeneProduct modified +
GO_CellularComponent modified +
NegativeRegulation modified +
ReactionCoordinates modified +
ReplacedResidue modified +
CrosslinkedResidue modified +
Complex modified +
GenomeEncodedEntity modified +
Person modified +
ReferenceMolecule modified +
ReactionVertex modified +
URL modified +
Edge modified +
TranslationalModification modified +
FunctionalStatus modified +
OtherEntity modified +
GO_MolecularFunction modified +
ReferenceDatabase modified +
ReactionlikeEvent modified +
CellType modified +
StableIdentifier modified +
AbstractModifiedResidue modified +
PathwayVertex modified +
PhysicalEntity modified +
VertexSearchableTerm modified +
IntraChainCrosslinkedResidue modified +
BlackBoxEvent modified +
ReferenceSequence modified +
FunctionalStatusType modified +
ReferenceIsoform modified +
PathwayCoordinates modified +
EvidenceType modified +
PsiMod modified +
FragmentDeletionModification modified +
OpenSet modified +
PathwayDiagram modified +
ConcurrentEventSet modified +
GeneticallyModifiedResidue modified +
LiteratureReference modified +
GO_BiologicalProcess modified +
PathwayDiagramItem modified +
EntityWithAccessionedSequence modified +
FailedReaction modified +
ReferenceGroup modified +
FragmentReplacedModification modified +
Book modified +
Polymerisation modified +
CatalystActivity modified +
FragmentInsertionModification modified +
Reaction modified +
_AttributeValueBeforeChange modified +
EntityCompartment modified +
ReferenceDNASequence modified +
FragmentModification modified +
Vertex modified +
EntityFunctionalStatus modified +
_Deleted modified +
SequenceOntology modified +
Polymer modified +
Disease modified +
ExternalOntology modified +
Depolymerisation modified +
Publication modified +
Pathway modified +
Taxon modified +
FrontPage modified +
GroupModifiedResidue modified +
ReferenceRNASequence created 1
ModifiedResidue created 1
_Release created 1
_InstanceBeforeChange created 1
DefinedSet created 1
InstanceEdit created 1
EntitySet created 1
InterChainCrosslinkedResidue created 1
Figure created 1
DatabaseObject created 1
Regulation created 1
Event created 1
DatabaseIdentifier created 1
PositiveRegulation created 1
CandidateSet created 1
Species created 1
ReferenceEntity created 1
Affiliation created 1
Requirement created 1
ReactionVertex created 1
TranslationalModification created 1
FunctionalStatus created 1
URL created 1
Edge created 1
GenomeEncodedEntity created 1
Person created 1
Complex created 1
CrosslinkedResidue created 1
ReplacedResidue created 1
ReactionCoordinates created 1
NegativeRegulation created 1
ReferenceMolecule created 1
Summation created 1
ControlledVocabulary created 1
EntityVertex created 1
GO_CellularComponent created 1
ReferenceGeneProduct created 1
DeletedControlledVocabulary created 1
Compartment created 1
SimpleEntity created 1
PathwayDiagramItem created 1
GO_BiologicalProcess created 1
LiteratureReference created 1
EntityWithAccessionedSequence created 1
OpenSet created 1
PathwayDiagram created 1
PsiMod created 1
FragmentDeletionModification created 1
GeneticallyModifiedResidue created 1
ConcurrentEventSet created 1
ReferenceSequence created 1
BlackBoxEvent created 1
IntraChainCrosslinkedResidue created 1
VertexSearchableTerm created 1
PhysicalEntity created 1
EvidenceType created 1
PathwayCoordinates created 1
ReferenceIsoform created 1
FunctionalStatusType created 1
ReactionlikeEvent created 1
CellType created 1
ReferenceDatabase created 1
GO_MolecularFunction created 1
OtherEntity created 1
PathwayVertex created 1
AbstractModifiedResidue created 1
StableIdentifier created 1
Pathway created 1
Publication created 1
FrontPage created 1
GroupModifiedResidue created 1
Taxon created 1
ExternalOntology created 1
Depolymerisation created 1
EntityFunctionalStatus created 1
Vertex created 1
FragmentModification created 1
EntityCompartment created 1
ReferenceDNASequence created 1
_AttributeValueBeforeChange created 1
Polymer created 1
Disease created 1
SequenceOntology created 1
_Deleted created 1
Polymerisation created 1
Book created 1
ReferenceGroup created 1
FragmentReplacedModification created 1
FailedReaction created 1
Reaction created 1
FragmentInsertionModification created 1
CatalystActivity created 1
Polymer revised +
PhysicalEntity revised +
BlackBoxEvent revised +
CandidateSet revised +
PositiveRegulation revised +
Requirement revised +
SimpleEntity revised +
Reaction revised +
FailedReaction revised +
OtherEntity revised +
ReactionlikeEvent revised +
Polymerisation revised +
EntitySet revised +
EntityWithAccessionedSequence revised +
DefinedSet revised +
Pathway revised +
Depolymerisation revised +
Regulation revised +
Event revised +
NegativeRegulation revised +
OpenSet revised +
Complex revised +
GenomeEncodedEntity revised +
Depolymerisation edited +
Event edited +
Regulation edited +
Complex edited +
GenomeEncodedEntity edited +
NegativeRegulation edited +
OpenSet edited +
EntityWithAccessionedSequence edited +
DefinedSet edited +
EntitySet edited +
Pathway edited +
Reaction edited +
SimpleEntity edited +
Requirement edited +
Polymerisation edited +
ReactionlikeEvent edited +
OtherEntity edited +
FailedReaction edited +
Polymer edited +
CandidateSet edited +
PositiveRegulation edited +
PhysicalEntity edited +
BlackBoxEvent edited +
Polymer reviewed +
CandidateSet reviewed +
PositiveRegulation reviewed +
PhysicalEntity reviewed +
BlackBoxEvent reviewed +
Reaction reviewed +
SimpleEntity reviewed +
Requirement reviewed +
ReactionlikeEvent reviewed +
Polymerisation reviewed +
OtherEntity reviewed +
FailedReaction reviewed +
EntityWithAccessionedSequence reviewed +
DefinedSet reviewed +
EntitySet reviewed +
Pathway reviewed +
Depolymerisation reviewed +
Regulation reviewed +
Event reviewed +
Complex reviewed +
GenomeEncodedEntity reviewed +
NegativeRegulation reviewed +
OpenSet reviewed +
_InstanceBeforeChange instanceEdit 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.