Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
ReactionlikeEvent authored +
NegativeRegulation authored 1
SimpleEntity authored 1
FailedReaction authored +
EntitySet authored 1
Polymer authored 1
GenomeEncodedEntity authored 1
Reaction authored +
ChemicalDrug authored 1
Pathway authored +
DefinedSet authored 1
OtherEntity authored 1
RNADrug authored 1
Complex authored 1
PositiveRegulation authored 1
BlackBoxEvent authored +
Event authored +
EntityWithAccessionedSequence authored 1
NegativeGeneExpressionRegulation authored 1
ProteinDrug authored 1
Requirement authored 1
Drug authored 1
Polymerisation authored +
CandidateSet authored 1
Regulation authored 1
OpenSet authored 1
Depolymerisation authored +
PositiveGeneExpressionRegulation authored 1
PhysicalEntity authored 1
NegativeGeneExpressionRegulation modified +
ModifiedResidue modified +
CellType modified +
InterChainCrosslinkedResidue modified +
ProteinDrug modified +
GO_MolecularFunction modified +
CandidateSet modified +
ReferenceDatabase modified +
EntityCompartment modified +
FragmentReplacedModification modified +
Depolymerisation modified +
_Release modified +
GeneticallyModifiedResidue modified +
SimpleEntity modified +
Person modified +
URL modified +
GO_BiologicalProcess modified +
InstanceEdit modified +
VertexSearchableTerm modified +
ConcurrentEventSet modified +
SequenceOntology modified +
FragmentInsertionModification modified +
ReferenceRNASequence modified +
FragmentModification modified +
DatabaseObject modified +
EntityFunctionalStatus modified +
Drug modified +
Species modified +
PathwayVertex modified +
Regulation modified +
ReferenceMolecule modified +
TranslationalModification modified +
Summation modified +
ReferenceDNASequence modified +
Book modified +
_InstanceBeforeChange modified +
ReferenceEntity modified +
Vertex modified +
ReactionCoordinates modified +
ReactionlikeEvent modified +
_Deleted modified +
DeletedControlledVocabulary modified +
Reaction modified +
ReferenceIsoform modified +
ExternalOntology modified +
ReferenceTherapeutic modified +
FragmentDeletionModification modified +
ReactionVertex modified +
Event modified +
PositiveRegulation modified +
EntityWithAccessionedSequence modified +
AbstractModifiedResidue modified +
Affiliation modified +
Requirement modified +
Polymerisation modified +
GroupModifiedResidue modified +
Disease modified +
Edge modified +
PhysicalEntity modified +
Compartment modified +
ReferenceSequence modified +
Publication modified +
CatalystActivity modified +
EntityVertex modified +
_AttributeValueBeforeChange modified +
PathwayCoordinates modified +
FailedReaction modified +
Polymer modified +
EntitySet modified +
ChemicalDrug modified +
StableIdentifier modified +
Figure modified +
Complex modified +
EvidenceType modified +
BlackBoxEvent modified +
IntraChainCrosslinkedResidue modified +
PsiMod modified +
FunctionalStatusType modified +
Taxon modified +
ReplacedResidue modified +
FrontPage modified +
ReferenceGeneProduct modified +
OpenSet modified +
GO_CellularComponent modified +
LiteratureReference modified +
PositiveGeneExpressionRegulation modified +
NegativeRegulation modified +
ControlledVocabulary modified +
DatabaseIdentifier modified +
FunctionalStatus modified +
GenomeEncodedEntity modified +
ReferenceGroup modified +
Pathway modified +
RNADrug modified +
OtherEntity modified +
DefinedSet modified +
PathwayDiagramItem modified +
PathwayDiagram modified +
CrosslinkedResidue modified +
Event revised +
BlackBoxEvent revised +
PositiveRegulation revised +
Complex revised +
RNADrug revised +
OtherEntity revised +
DefinedSet revised +
ChemicalDrug revised +
Pathway revised +
Reaction revised +
EntitySet revised +
GenomeEncodedEntity revised +
Polymer revised +
FailedReaction revised +
SimpleEntity revised +
NegativeRegulation revised +
ReactionlikeEvent revised +
PhysicalEntity revised +
PositiveGeneExpressionRegulation revised +
Depolymerisation revised +
OpenSet revised +
Regulation revised +
CandidateSet revised +
Polymerisation revised +
Drug revised +
Requirement revised +
ProteinDrug revised +
NegativeGeneExpressionRegulation revised +
EntityWithAccessionedSequence revised +
ProteinDrug edited +
Requirement edited +
Drug edited +
EntityWithAccessionedSequence edited +
NegativeGeneExpressionRegulation edited +
Depolymerisation edited +
PositiveGeneExpressionRegulation edited +
PhysicalEntity edited +
Polymerisation edited +
CandidateSet edited +
Regulation edited +
OpenSet edited +
FailedReaction edited +
Polymer edited +
EntitySet edited +
GenomeEncodedEntity edited +
Reaction edited +
NegativeRegulation edited +
ReactionlikeEvent edited +
SimpleEntity edited +
Event edited +
BlackBoxEvent edited +
PositiveRegulation edited +
Pathway edited +
ChemicalDrug edited +
OtherEntity edited +
DefinedSet edited +
RNADrug edited +
Complex edited +
_InstanceBeforeChange instanceEdit 1
Regulation reviewed +
OpenSet reviewed +
Polymerisation reviewed +
CandidateSet reviewed +
PositiveGeneExpressionRegulation reviewed +
PhysicalEntity reviewed +
Depolymerisation reviewed +
NegativeGeneExpressionRegulation reviewed +
EntityWithAccessionedSequence reviewed +
ProteinDrug reviewed +
Drug reviewed +
Requirement reviewed +
Complex reviewed +
ChemicalDrug reviewed +
Pathway reviewed +
RNADrug reviewed +
OtherEntity reviewed +
DefinedSet reviewed +
BlackBoxEvent reviewed +
Event reviewed +
PositiveRegulation reviewed +
SimpleEntity reviewed +
ReactionlikeEvent reviewed +
NegativeRegulation reviewed +
GenomeEncodedEntity reviewed +
EntitySet reviewed +
Polymer reviewed +
Reaction reviewed +
FailedReaction reviewed +
GO_CellularComponent created 1
LiteratureReference created 1
PositiveGeneExpressionRegulation created 1
ReferenceGeneProduct created 1
OpenSet created 1
ReplacedResidue created 1
FrontPage created 1
FunctionalStatusType created 1
IntraChainCrosslinkedResidue created 1
PsiMod created 1
Taxon created 1
CrosslinkedResidue created 1
Pathway created 1
OtherEntity created 1
DefinedSet created 1
RNADrug created 1
PathwayDiagramItem created 1
PathwayDiagram created 1
DatabaseIdentifier created 1
FunctionalStatus created 1
GenomeEncodedEntity created 1
ReferenceGroup created 1
NegativeRegulation created 1
ControlledVocabulary created 1
Disease created 1
Edge created 1
Compartment created 1
PhysicalEntity created 1
Polymerisation created 1
GroupModifiedResidue created 1
Affiliation created 1
Requirement created 1
EntityWithAccessionedSequence created 1
AbstractModifiedResidue created 1
BlackBoxEvent created 1
EvidenceType created 1
ChemicalDrug created 1
StableIdentifier created 1
Figure created 1
Complex created 1
FailedReaction created 1
PathwayCoordinates created 1
EntitySet created 1
Polymer created 1
Publication created 1
ReferenceSequence created 1
CatalystActivity created 1
EntityVertex created 1
_AttributeValueBeforeChange created 1
ReferenceDNASequence created 1
Book created 1
_InstanceBeforeChange created 1
ReferenceEntity created 1
Vertex created 1
ReactionCoordinates created 1
Species created 1
PathwayVertex created 1
ReferenceMolecule created 1
Regulation created 1
Summation created 1
TranslationalModification created 1
DatabaseObject created 1
EntityFunctionalStatus created 1
Drug created 1
ReferenceRNASequence created 1
FragmentInsertionModification created 1
FragmentModification created 1
PositiveRegulation created 1
ReactionVertex created 1
Event created 1
ReferenceIsoform created 1
ExternalOntology created 1
FragmentDeletionModification created 1
ReferenceTherapeutic created 1
_Deleted created 1
DeletedControlledVocabulary created 1
Reaction created 1
ReactionlikeEvent created 1
_Release created 1
Depolymerisation created 1
CandidateSet created 1
EntityCompartment created 1
ReferenceDatabase created 1
FragmentReplacedModification created 1
InterChainCrosslinkedResidue created 1
ProteinDrug created 1
GO_MolecularFunction created 1
NegativeGeneExpressionRegulation created 1
ModifiedResidue created 1
CellType created 1
VertexSearchableTerm created 1
ConcurrentEventSet created 1
SequenceOntology created 1
InstanceEdit created 1
Person created 1
URL created 1
GO_BiologicalProcess created 1
GeneticallyModifiedResidue created 1
SimpleEntity created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.