Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Reaction revised +
Event revised +
Pathway revised +
CandidateSet revised +
DefinedSet revised +
PositiveRegulation revised +
Polymerisation revised +
PhysicalEntity revised +
Complex revised +
PositiveGeneExpressionRegulation revised +
FailedReaction revised +
SimpleEntity revised +
BlackBoxEvent revised +
GenomeEncodedEntity revised +
Depolymerisation revised +
OpenSet revised +
EntitySet revised +
NegativeRegulation revised +
Polymer revised +
Regulation revised +
ReactionlikeEvent revised +
Requirement revised +
NegativeGeneExpressionRegulation revised +
EntityWithAccessionedSequence revised +
OtherEntity revised +
_InstanceBeforeChange instanceEdit 1
NegativeGeneExpressionRegulation reviewed +
EntityWithAccessionedSequence reviewed +
OtherEntity reviewed +
EntitySet reviewed +
OpenSet reviewed +
NegativeRegulation reviewed +
Polymer reviewed +
Depolymerisation reviewed +
ReactionlikeEvent reviewed +
Regulation reviewed +
Requirement reviewed +
PhysicalEntity reviewed +
Polymerisation reviewed +
Complex reviewed +
SimpleEntity reviewed +
FailedReaction reviewed +
PositiveGeneExpressionRegulation reviewed +
BlackBoxEvent reviewed +
GenomeEncodedEntity reviewed +
Reaction reviewed +
Event reviewed +
Pathway reviewed +
DefinedSet reviewed +
PositiveRegulation reviewed +
CandidateSet reviewed +
GenomeEncodedEntity authored 1
BlackBoxEvent authored +
Complex authored 1
PhysicalEntity authored 1
Polymerisation authored +
PositiveGeneExpressionRegulation authored 1
FailedReaction authored +
SimpleEntity authored 1
Pathway authored +
CandidateSet authored 1
PositiveRegulation authored 1
DefinedSet authored 1
Reaction authored +
Event authored +
EntityWithAccessionedSequence authored 1
OtherEntity authored 1
NegativeGeneExpressionRegulation authored 1
Requirement authored 1
Depolymerisation authored +
OpenSet authored 1
NegativeRegulation authored 1
Polymer authored 1
EntitySet authored 1
Regulation authored 1
ReactionlikeEvent authored +
GroupModifiedResidue created 1
EntityWithAccessionedSequence created 1
SequenceOntology created 1
ReferenceDatabase created 1
DatabaseIdentifier created 1
GO_MolecularFunction created 1
EntityCompartment created 1
ReactionlikeEvent created 1
NegativeRegulation created 1
_Release created 1
PathwayDiagram created 1
StableIdentifier created 1
FunctionalStatusType created 1
FailedReaction created 1
PositiveGeneExpressionRegulation created 1
ReferenceGroup created 1
ControlledVocabulary created 1
TranslationalModification created 1
Pathway created 1
OtherEntity created 1
FunctionalStatus created 1
InterChainCrosslinkedResidue created 1
_AttributeValueBeforeChange created 1
Vertex created 1
ReferenceIsoform created 1
FrontPage created 1
ReplacedResidue created 1
GO_CellularComponent created 1
InstanceEdit created 1
FragmentReplacedModification created 1
VertexSearchableTerm created 1
Summation created 1
OpenSet created 1
DatabaseObject created 1
FragmentDeletionModification created 1
ReferenceDNASequence created 1
ReferenceGeneProduct created 1
ReferenceEntity created 1
FragmentInsertionModification created 1
Affiliation created 1
CrosslinkedResidue created 1
NegativeGeneExpressionRegulation created 1
ConcurrentEventSet created 1
PathwayVertex created 1
EntitySet created 1
Polymer created 1
PsiMod created 1
DeletedControlledVocabulary created 1
BlackBoxEvent created 1
GenomeEncodedEntity created 1
ExternalOntology created 1
GO_BiologicalProcess created 1
EvidenceType created 1
ReferenceSequence created 1
EntityFunctionalStatus created 1
PhysicalEntity created 1
AbstractModifiedResidue created 1
URL created 1
Complex created 1
PathwayCoordinates created 1
ReactionVertex created 1
IntraChainCrosslinkedResidue created 1
_Deleted created 1
Figure created 1
ModifiedResidue created 1
Event created 1
Reaction created 1
PathwayDiagramItem created 1
Person created 1
ReferenceMolecule created 1
Publication created 1
Taxon created 1
Book created 1
EntityVertex created 1
ReactionCoordinates created 1
Requirement created 1
Disease created 1
Regulation created 1
_InstanceBeforeChange created 1
ReferenceRNASequence created 1
FragmentModification created 1
Depolymerisation created 1
Species created 1
Edge created 1
CellType created 1
SimpleEntity created 1
Polymerisation created 1
CandidateSet created 1
PositiveRegulation created 1
DefinedSet created 1
CatalystActivity created 1
GeneticallyModifiedResidue created 1
LiteratureReference created 1
Compartment created 1
Edge modified +
CellType modified +
SimpleEntity modified +
Polymerisation modified +
CandidateSet modified +
DefinedSet modified +
GeneticallyModifiedResidue modified +
CatalystActivity modified +
PositiveRegulation modified +
LiteratureReference modified +
Compartment modified +
Person modified +
ReferenceMolecule modified +
Publication modified +
Taxon modified +
Book modified +
ReactionCoordinates modified +
EntityVertex modified +
Requirement modified +
Disease modified +
Regulation modified +
_InstanceBeforeChange modified +
ReferenceRNASequence modified +
Depolymerisation modified +
FragmentModification modified +
Species modified +
DeletedControlledVocabulary modified +
BlackBoxEvent modified +
GenomeEncodedEntity modified +
GO_BiologicalProcess modified +
ExternalOntology modified +
EvidenceType modified +
ReferenceSequence modified +
EntityFunctionalStatus modified +
URL modified +
AbstractModifiedResidue modified +
PhysicalEntity modified +
Complex modified +
PathwayCoordinates modified +
IntraChainCrosslinkedResidue modified +
ReactionVertex modified +
_Deleted modified +
Event modified +
Figure modified +
ModifiedResidue modified +
Reaction modified +
PathwayDiagramItem modified +
Affiliation modified +
CrosslinkedResidue modified +
NegativeGeneExpressionRegulation modified +
PathwayVertex modified +
ConcurrentEventSet modified +
Polymer modified +
EntitySet modified +
PsiMod modified +
DatabaseObject modified +
FragmentDeletionModification modified +
ReferenceDNASequence modified +
ReferenceGeneProduct modified +
ReferenceEntity modified +
FragmentInsertionModification modified +
OtherEntity modified +
FunctionalStatus modified +
InterChainCrosslinkedResidue modified +
_AttributeValueBeforeChange modified +
Vertex modified +
ReferenceIsoform modified +
FrontPage modified +
GO_CellularComponent modified +
ReplacedResidue modified +
FragmentReplacedModification modified +
InstanceEdit modified +
VertexSearchableTerm modified +
Summation modified +
OpenSet modified +
PathwayDiagram modified +
StableIdentifier modified +
FailedReaction modified +
PositiveGeneExpressionRegulation modified +
FunctionalStatusType modified +
ReferenceGroup modified +
ControlledVocabulary modified +
TranslationalModification modified +
Pathway modified +
GroupModifiedResidue modified +
EntityWithAccessionedSequence modified +
SequenceOntology modified +
ReferenceDatabase modified +
DatabaseIdentifier modified +
GO_MolecularFunction modified +
EntityCompartment modified +
ReactionlikeEvent modified +
_Release modified +
NegativeRegulation modified +
Requirement edited +
Depolymerisation edited +
EntitySet edited +
OpenSet edited +
NegativeRegulation edited +
Polymer edited +
Regulation edited +
ReactionlikeEvent edited +
EntityWithAccessionedSequence edited +
OtherEntity edited +
NegativeGeneExpressionRegulation edited +
Pathway edited +
CandidateSet edited +
DefinedSet edited +
PositiveRegulation edited +
Reaction edited +
Event edited +
BlackBoxEvent edited +
GenomeEncodedEntity edited +
Complex edited +
PhysicalEntity edited +
Polymerisation edited +
PositiveGeneExpressionRegulation edited +
FailedReaction edited +
SimpleEntity edited +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.