Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
_InstanceBeforeChange instanceEdit 1
PositiveRegulation authored 1
NegativeRegulation authored 1
Reaction authored +
OtherEntity authored 1
SimpleEntity authored 1
Polymer authored 1
PhysicalEntity authored 1
EntityWithAccessionedSequence authored 1
Event authored +
ReactionlikeEvent authored +
Polymerisation authored +
EntitySet authored 1
BlackBoxEvent authored +
DefinedSet authored 1
CandidateSet authored 1
Regulation authored 1
Requirement authored 1
OpenSet authored 1
GenomeEncodedEntity authored 1
Complex authored 1
Depolymerisation authored +
FailedReaction authored +
Pathway authored +
EntityWithAccessionedSequence revised +
PhysicalEntity revised +
Event revised +
ReactionlikeEvent revised +
SimpleEntity revised +
Polymer revised +
OtherEntity revised +
PositiveRegulation revised +
Reaction revised +
NegativeRegulation revised +
GenomeEncodedEntity revised +
Complex revised +
Pathway revised +
Depolymerisation revised +
FailedReaction revised +
OpenSet revised +
Requirement revised +
Regulation revised +
DefinedSet revised +
CandidateSet revised +
Polymerisation revised +
BlackBoxEvent revised +
EntitySet revised +
PositiveRegulation reviewed +
Reaction reviewed +
NegativeRegulation reviewed +
OtherEntity reviewed +
Polymer reviewed +
SimpleEntity reviewed +
EntityWithAccessionedSequence reviewed +
PhysicalEntity reviewed +
Event reviewed +
ReactionlikeEvent reviewed +
Polymerisation reviewed +
EntitySet reviewed +
BlackBoxEvent reviewed +
Regulation reviewed +
DefinedSet reviewed +
CandidateSet reviewed +
OpenSet reviewed +
Requirement reviewed +
Complex reviewed +
GenomeEncodedEntity reviewed +
Pathway reviewed +
FailedReaction reviewed +
Depolymerisation reviewed +
EntityCompartment created 1
SimpleEntity created 1
InterChainCrosslinkedResidue created 1
InstanceEdit created 1
Edge created 1
IntraChainCrosslinkedResidue created 1
ReferenceGeneProduct created 1
OtherEntity created 1
ReferenceGroup created 1
ReferenceIsoform created 1
Vertex created 1
GenomeEncodedEntity created 1
CatalystActivity created 1
ReferenceMolecule created 1
OpenSet created 1
FragmentDeletionModification created 1
BlackBoxEvent created 1
CellType created 1
ReferenceRNASequence created 1
PathwayDiagramItem created 1
Disease created 1
ExternalOntology created 1
Taxon created 1
_Deleted created 1
EntityVertex created 1
FrontPage created 1
GO_MolecularFunction created 1
NegativeRegulation created 1
Reaction created 1
ReactionCoordinates created 1
Summation created 1
LiteratureReference created 1
Pathway created 1
PathwayDiagram created 1
ModifiedResidue created 1
Depolymerisation created 1
FailedReaction created 1
FragmentModification created 1
SequenceOntology created 1
PathwayCoordinates created 1
Publication created 1
Affiliation created 1
Regulation created 1
CandidateSet created 1
Compartment created 1
_AttributeValueBeforeChange created 1
Polymerisation created 1
DatabaseIdentifier created 1
ReferenceSequence created 1
Event created 1
ReferenceDNASequence created 1
GeneticallyModifiedResidue created 1
StableIdentifier created 1
PhysicalEntity created 1
ConcurrentEventSet created 1
Polymer created 1
EntityFunctionalStatus created 1
GO_CellularComponent created 1
Species created 1
AbstractModifiedResidue created 1
Complex created 1
FunctionalStatusType created 1
FragmentInsertionModification created 1
Requirement created 1
PsiMod created 1
_InstanceBeforeChange created 1
FunctionalStatus created 1
DatabaseObject created 1
ReferenceDatabase created 1
VertexSearchableTerm created 1
ReactionlikeEvent created 1
PathwayVertex created 1
EntityWithAccessionedSequence created 1
ReactionVertex created 1
GO_BiologicalProcess created 1
DeletedControlledVocabulary created 1
ReferenceEntity created 1
PositiveRegulation created 1
Book created 1
FragmentReplacedModification created 1
Figure created 1
URL created 1
_Release created 1
TranslationalModification created 1
EvidenceType created 1
ReplacedResidue created 1
GroupModifiedResidue created 1
DefinedSet created 1
EntitySet created 1
ControlledVocabulary created 1
CrosslinkedResidue created 1
Person created 1
EntityWithAccessionedSequence modified +
ReactionlikeEvent modified +
PathwayVertex modified +
GO_BiologicalProcess modified +
ReactionVertex modified +
ReferenceEntity modified +
PositiveRegulation modified +
DeletedControlledVocabulary modified +
Figure modified +
URL modified +
_Release modified +
TranslationalModification modified +
Book modified +
FragmentReplacedModification modified +
EvidenceType modified +
ReplacedResidue modified +
DefinedSet modified +
GroupModifiedResidue modified +
Person modified +
CrosslinkedResidue modified +
EntitySet modified +
ControlledVocabulary modified +
GeneticallyModifiedResidue modified +
ReferenceDNASequence modified +
PhysicalEntity modified +
StableIdentifier modified +
ReferenceSequence modified +
DatabaseIdentifier modified +
Event modified +
EntityFunctionalStatus modified +
ConcurrentEventSet modified +
Polymer modified +
GO_CellularComponent modified +
Species modified +
AbstractModifiedResidue modified +
Complex modified +
PsiMod modified +
Requirement modified +
FragmentInsertionModification modified +
FunctionalStatusType modified +
FunctionalStatus modified +
_InstanceBeforeChange modified +
VertexSearchableTerm modified +
ReferenceDatabase modified +
DatabaseObject modified +
ExternalOntology modified +
Disease modified +
PathwayDiagramItem modified +
EntityVertex modified +
FrontPage modified +
_Deleted modified +
Taxon modified +
GO_MolecularFunction modified +
LiteratureReference modified +
Summation modified +
NegativeRegulation modified +
ReactionCoordinates modified +
Reaction modified +
Pathway modified +
FailedReaction modified +
PathwayDiagram modified +
ModifiedResidue modified +
Depolymerisation modified +
PathwayCoordinates modified +
SequenceOntology modified +
Publication modified +
FragmentModification modified +
Regulation modified +
CandidateSet modified +
Compartment modified +
Affiliation modified +
Polymerisation modified +
_AttributeValueBeforeChange modified +
Edge modified +
SimpleEntity modified +
EntityCompartment modified +
InterChainCrosslinkedResidue modified +
InstanceEdit modified +
ReferenceGeneProduct modified +
OtherEntity modified +
ReferenceGroup modified +
IntraChainCrosslinkedResidue modified +
ReferenceIsoform modified +
GenomeEncodedEntity modified +
Vertex modified +
OpenSet modified +
CatalystActivity modified +
ReferenceMolecule modified +
FragmentDeletionModification modified +
CellType modified +
BlackBoxEvent modified +
ReferenceRNASequence modified +
Event edited +
ReactionlikeEvent edited +
PhysicalEntity edited +
EntityWithAccessionedSequence edited +
Polymer edited +
SimpleEntity edited +
OtherEntity edited +
NegativeRegulation edited +
Reaction edited +
PositiveRegulation edited +
Depolymerisation edited +
FailedReaction edited +
Pathway edited +
GenomeEncodedEntity edited +
Complex edited +
OpenSet edited +
Requirement edited +
DefinedSet edited +
CandidateSet edited +
Regulation edited +
BlackBoxEvent edited +
EntitySet edited +
Polymerisation edited +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.