Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
BlackBoxEvent reviewed +
Complex reviewed +
Requirement reviewed +
OtherEntity reviewed +
Depolymerisation reviewed +
Pathway reviewed +
EntityWithAccessionedSequence reviewed +
NegativeRegulation reviewed +
Polymerisation reviewed +
GenomeEncodedEntity reviewed +
PhysicalEntity reviewed +
OpenSet reviewed +
SimpleEntity reviewed +
EntitySet reviewed +
PositiveRegulation reviewed +
FailedReaction reviewed +
Polymer reviewed +
Reaction reviewed +
CandidateSet reviewed +
DefinedSet reviewed +
Event reviewed +
Regulation reviewed +
ReactionlikeEvent reviewed +
ReactionVertex modified +
InterChainCrosslinkedResidue modified +
CandidateSet modified +
PhysicalEntity modified +
GO_CellularComponent modified +
ReferenceEntity modified +
Publication modified +
_Release modified +
ControlledVocabulary modified +
URL modified +
DeletedControlledVocabulary modified +
ExternalOntology modified +
DatabaseObject modified +
FragmentReplacedModification modified +
FrontPage modified +
FunctionalStatusType modified +
TranslationalModification modified +
GO_BiologicalProcess modified +
Depolymerisation modified +
ReferenceDNASequence modified +
OtherEntity modified +
EntityFunctionalStatus modified +
ReferenceIsoform modified +
IntraChainCrosslinkedResidue modified +
_Deleted modified +
OpenSet modified +
GO_MolecularFunction modified +
FailedReaction modified +
GroupModifiedResidue modified +
Disease modified +
ReferenceRNASequence modified +
EntitySet modified +
PathwayVertex modified +
_InstanceBeforeChange modified +
CatalystActivity modified +
EntityWithAccessionedSequence modified +
Figure modified +
Pathway modified +
NegativeRegulation modified +
ReferenceMolecule modified +
ReferenceDatabase modified +
PathwayDiagram modified +
_AttributeValueBeforeChange modified +
PathwayCoordinates modified +
FunctionalStatus modified +
EntityVertex modified +
Species modified +
ReferenceSequence modified +
AbstractModifiedResidue modified +
InstanceEdit modified +
Taxon modified +
ReferenceGroup modified +
Event modified +
DefinedSet modified +
ReactionCoordinates modified +
Polymer modified +
GeneticallyModifiedResidue modified +
DatabaseIdentifier modified +
SimpleEntity modified +
CellType modified +
Edge modified +
Polymerisation modified +
Affiliation modified +
StableIdentifier modified +
EvidenceType modified +
Reaction modified +
Regulation modified +
ReactionlikeEvent modified +
ModifiedResidue modified +
PsiMod modified +
GenomeEncodedEntity modified +
PositiveRegulation modified +
FragmentModification modified +
Book modified +
CrosslinkedResidue modified +
LiteratureReference modified +
VertexSearchableTerm modified +
ReferenceGeneProduct modified +
EntityCompartment modified +
Requirement modified +
Vertex modified +
Complex modified +
Person modified +
BlackBoxEvent modified +
Compartment modified +
FragmentInsertionModification modified +
FragmentDeletionModification modified +
ReplacedResidue modified +
SequenceOntology modified +
ConcurrentEventSet modified +
PathwayDiagramItem modified +
Summation modified +
Reaction edited +
Regulation edited +
ReactionlikeEvent edited +
DefinedSet edited +
CandidateSet edited +
Event edited +
PhysicalEntity edited +
GenomeEncodedEntity edited +
OpenSet edited +
EntitySet edited +
SimpleEntity edited +
Polymer edited +
FailedReaction edited +
PositiveRegulation edited +
Pathway edited +
EntityWithAccessionedSequence edited +
Polymerisation edited +
NegativeRegulation edited +
BlackBoxEvent edited +
Requirement edited +
Complex edited +
OtherEntity edited +
Depolymerisation edited +
BlackBoxEvent revised +
Complex revised +
Requirement revised +
OtherEntity revised +
Depolymerisation revised +
Pathway revised +
EntityWithAccessionedSequence revised +
NegativeRegulation revised +
Polymerisation revised +
GenomeEncodedEntity revised +
PhysicalEntity revised +
OpenSet revised +
SimpleEntity revised +
EntitySet revised +
Polymer revised +
FailedReaction revised +
PositiveRegulation revised +
Reaction revised +
DefinedSet revised +
CandidateSet revised +
Event revised +
ReactionlikeEvent revised +
Regulation revised +
GO_CellularComponent created 1
PhysicalEntity created 1
ReferenceEntity created 1
Publication created 1
_Release created 1
ControlledVocabulary created 1
URL created 1
InterChainCrosslinkedResidue created 1
CandidateSet created 1
ReactionVertex created 1
TranslationalModification created 1
ReferenceDNASequence created 1
OtherEntity created 1
GO_BiologicalProcess created 1
Depolymerisation created 1
ExternalOntology created 1
FragmentReplacedModification created 1
DatabaseObject created 1
DeletedControlledVocabulary created 1
FunctionalStatusType created 1
FrontPage created 1
IntraChainCrosslinkedResidue created 1
_Deleted created 1
OpenSet created 1
EntitySet created 1
PathwayVertex created 1
GO_MolecularFunction created 1
FailedReaction created 1
GroupModifiedResidue created 1
Disease created 1
ReferenceRNASequence created 1
EntityFunctionalStatus created 1
ReferenceIsoform created 1
EntityVertex created 1
Species created 1
PathwayCoordinates created 1
_AttributeValueBeforeChange created 1
FunctionalStatus created 1
ReferenceSequence created 1
Figure created 1
Pathway created 1
_InstanceBeforeChange created 1
CatalystActivity created 1
EntityWithAccessionedSequence created 1
ReferenceMolecule created 1
ReferenceDatabase created 1
PathwayDiagram created 1
NegativeRegulation created 1
ReactionCoordinates created 1
SimpleEntity created 1
Polymer created 1
DatabaseIdentifier created 1
GeneticallyModifiedResidue created 1
ReferenceGroup created 1
AbstractModifiedResidue created 1
InstanceEdit created 1
Taxon created 1
Event created 1
DefinedSet created 1
EvidenceType created 1
CellType created 1
Edge created 1
Affiliation created 1
StableIdentifier created 1
Polymerisation created 1
GenomeEncodedEntity created 1
ModifiedResidue created 1
PsiMod created 1
Book created 1
CrosslinkedResidue created 1
FragmentModification created 1
LiteratureReference created 1
PositiveRegulation created 1
Reaction created 1
ReactionlikeEvent created 1
Regulation created 1
BlackBoxEvent created 1
FragmentInsertionModification created 1
Compartment created 1
Requirement created 1
Vertex created 1
Person created 1
Complex created 1
SequenceOntology created 1
ReplacedResidue created 1
PathwayDiagramItem created 1
ConcurrentEventSet created 1
Summation created 1
FragmentDeletionModification created 1
ReferenceGeneProduct created 1
VertexSearchableTerm created 1
EntityCompartment created 1
_InstanceBeforeChange instanceEdit 1
SimpleEntity authored 1
EntitySet authored 1
Polymer authored 1
FailedReaction authored +
PositiveRegulation authored 1
GenomeEncodedEntity authored 1
PhysicalEntity authored 1
OpenSet authored 1
CandidateSet authored 1
Event authored +
DefinedSet authored 1
Regulation authored 1
ReactionlikeEvent authored +
Reaction authored +
OtherEntity authored 1
Depolymerisation authored +
BlackBoxEvent authored +
Complex authored 1
Requirement authored 1
NegativeRegulation authored 1
Polymerisation authored +
Pathway authored +
EntityWithAccessionedSequence authored 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.