Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
NegativeRegulation revised +
Regulation revised +
Polymer revised +
BlackBoxEvent revised +
DefinedSet revised +
ReactionlikeEvent revised +
Polymerisation revised +
OtherEntity revised +
EntitySet revised +
CandidateSet revised +
SimpleEntity revised +
GenomeEncodedEntity revised +
OpenSet revised +
Complex revised +
Depolymerisation revised +
EntityWithAccessionedSequence revised +
Pathway revised +
Reaction revised +
Requirement revised +
Event revised +
PhysicalEntity revised +
FailedReaction revised +
PositiveRegulation revised +
PathwayCoordinates modified +
FailedReaction modified +
StableIdentifier modified +
LiteratureReference modified +
GroupModifiedResidue modified +
_Release modified +
DatabaseIdentifier modified +
DeletedControlledVocabulary modified +
Depolymerisation modified +
InterChainCrosslinkedResidue modified +
Complex modified +
Compartment modified +
PathwayVertex modified +
GO_CellularComponent modified +
EntitySet modified +
ReferenceMolecule modified +
ReactionVertex modified +
EntityCompartment modified +
GeneticallyModifiedResidue modified +
GO_BiologicalProcess modified +
GO_MolecularFunction modified +
InstanceEdit modified +
TranslationalModification modified +
ReferenceIsoform modified +
Requirement modified +
ReferenceSequence modified +
ReferenceRNASequence modified +
ReplacedResidue modified +
Book modified +
PathwayDiagramItem modified +
URL modified +
_AttributeValueBeforeChange modified +
ExternalOntology modified +
Reaction modified +
EntityWithAccessionedSequence modified +
ReferenceGroup modified +
ReferenceDNASequence modified +
Edge modified +
FragmentModification modified +
Disease modified +
Publication modified +
SimpleEntity modified +
_InstanceBeforeChange modified +
AbstractModifiedResidue modified +
PathwayDiagram modified +
EntityFunctionalStatus modified +
_Deleted modified +
EvidenceType modified +
DatabaseObject modified +
ReferenceDatabase modified +
ReactionlikeEvent modified +
FragmentReplacedModification modified +
ReferenceGeneProduct modified +
BlackBoxEvent modified +
Species modified +
SequenceOntology modified +
VertexSearchableTerm modified +
Event modified +
Summation modified +
EntityVertex modified +
OpenSet modified +
Pathway modified +
ModifiedResidue modified +
CandidateSet modified +
GenomeEncodedEntity modified +
IntraChainCrosslinkedResidue modified +
FunctionalStatusType modified +
FrontPage modified +
Affiliation modified +
FunctionalStatus modified +
Person modified +
CellType modified +
DefinedSet modified +
CrosslinkedResidue modified +
Taxon modified +
NegativeRegulation modified +
ControlledVocabulary modified +
ReferenceEntity modified +
FragmentDeletionModification modified +
ConcurrentEventSet modified +
PositiveRegulation modified +
FragmentInsertionModification modified +
ReactionCoordinates modified +
PhysicalEntity modified +
CatalystActivity modified +
Figure modified +
Polymerisation modified +
OtherEntity modified +
Vertex modified +
PsiMod modified +
Polymer modified +
Regulation modified +
PositiveRegulation authored 1
FailedReaction authored +
PhysicalEntity authored 1
Event authored +
Requirement authored 1
Reaction authored +
Pathway authored +
EntityWithAccessionedSequence authored 1
Depolymerisation authored +
Complex authored 1
OpenSet authored 1
GenomeEncodedEntity authored 1
SimpleEntity authored 1
CandidateSet authored 1
EntitySet authored 1
OtherEntity authored 1
Polymerisation authored +
ReactionlikeEvent authored +
DefinedSet authored 1
BlackBoxEvent authored +
Polymer authored 1
Regulation authored 1
NegativeRegulation authored 1
VertexSearchableTerm created 1
Event created 1
Summation created 1
ModifiedResidue created 1
CandidateSet created 1
GenomeEncodedEntity created 1
EntityVertex created 1
OpenSet created 1
Pathway created 1
IntraChainCrosslinkedResidue created 1
Taxon created 1
NegativeRegulation created 1
ControlledVocabulary created 1
FragmentDeletionModification created 1
ReferenceEntity created 1
FrontPage created 1
FunctionalStatusType created 1
Affiliation created 1
FunctionalStatus created 1
Person created 1
CellType created 1
CrosslinkedResidue created 1
DefinedSet created 1
ReactionCoordinates created 1
PhysicalEntity created 1
ConcurrentEventSet created 1
PositiveRegulation created 1
FragmentInsertionModification created 1
CatalystActivity created 1
Polymerisation created 1
OtherEntity created 1
Figure created 1
Polymer created 1
Regulation created 1
Vertex created 1
PsiMod created 1
LiteratureReference created 1
GroupModifiedResidue created 1
_Release created 1
PathwayCoordinates created 1
FailedReaction created 1
StableIdentifier created 1
PathwayVertex created 1
DatabaseIdentifier created 1
DeletedControlledVocabulary created 1
Depolymerisation created 1
InterChainCrosslinkedResidue created 1
Complex created 1
Compartment created 1
EntitySet created 1
GO_CellularComponent created 1
ReferenceMolecule created 1
ReactionVertex created 1
EntityCompartment created 1
GeneticallyModifiedResidue created 1
GO_BiologicalProcess created 1
GO_MolecularFunction created 1
InstanceEdit created 1
TranslationalModification created 1
Requirement created 1
ReplacedResidue created 1
ReferenceRNASequence created 1
ReferenceSequence created 1
Book created 1
PathwayDiagramItem created 1
ReferenceIsoform created 1
FragmentModification created 1
Edge created 1
ReferenceDNASequence created 1
Disease created 1
Publication created 1
SimpleEntity created 1
URL created 1
ExternalOntology created 1
_AttributeValueBeforeChange created 1
Reaction created 1
EntityWithAccessionedSequence created 1
ReferenceGroup created 1
_Deleted created 1
EvidenceType created 1
AbstractModifiedResidue created 1
_InstanceBeforeChange created 1
PathwayDiagram created 1
EntityFunctionalStatus created 1
Species created 1
BlackBoxEvent created 1
SequenceOntology created 1
DatabaseObject created 1
ReferenceDatabase created 1
ReactionlikeEvent created 1
FragmentReplacedModification created 1
ReferenceGeneProduct created 1
DefinedSet reviewed +
ReactionlikeEvent reviewed +
NegativeRegulation reviewed +
Regulation reviewed +
BlackBoxEvent reviewed +
Polymer reviewed +
EntitySet reviewed +
Polymerisation reviewed +
OtherEntity reviewed +
Complex reviewed +
OpenSet reviewed +
Depolymerisation reviewed +
EntityWithAccessionedSequence reviewed +
Pathway reviewed +
Reaction reviewed +
CandidateSet reviewed +
SimpleEntity reviewed +
GenomeEncodedEntity reviewed +
FailedReaction reviewed +
PositiveRegulation reviewed +
Requirement reviewed +
Event reviewed +
PhysicalEntity reviewed +
DefinedSet edited +
ReactionlikeEvent edited +
NegativeRegulation edited +
Regulation edited +
Polymer edited +
BlackBoxEvent edited +
EntitySet edited +
Polymerisation edited +
OtherEntity edited +
Complex edited +
OpenSet edited +
Depolymerisation edited +
Pathway edited +
EntityWithAccessionedSequence edited +
Reaction edited +
SimpleEntity edited +
CandidateSet edited +
GenomeEncodedEntity edited +
FailedReaction edited +
PositiveRegulation edited +
Requirement edited +
PhysicalEntity edited +
Event edited +
_InstanceBeforeChange instanceEdit 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.