Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
SequenceOntology created 1
PathwayDiagramItem created 1
ReplacedResidue created 1
ModifiedResidue created 1
CrosslinkedResidue created 1
OpenSet created 1
OtherEntity created 1
FunctionalStatusType created 1
FunctionalStatus created 1
ReferenceMolecule created 1
ReactionCoordinates created 1
BlackBoxEvent created 1
Person created 1
Edge created 1
DeletedControlledVocabulary created 1
ReferenceGroup created 1
VertexSearchableTerm created 1
FragmentReplacedModification created 1
Reaction created 1
PsiMod created 1
URL created 1
ReferenceSequence created 1
GO_BiologicalProcess created 1
EvidenceType created 1
GenomeEncodedEntity created 1
Species created 1
Figure created 1
ReferenceDNASequence created 1
Pathway created 1
FragmentDeletionModification created 1
PositiveGeneExpressionRegulation created 1
ReactionVertex created 1
ReferenceGeneProduct created 1
ReferenceEntity created 1
AbstractModifiedResidue created 1
FragmentInsertionModification created 1
Polymerisation created 1
EntityVertex created 1
DatabaseObject created 1
GO_CellularComponent created 1
Book created 1
FrontPage created 1
EntityCompartment created 1
PathwayVertex created 1
Requirement created 1
Compartment created 1
Disease created 1
DatabaseIdentifier created 1
CellType created 1
Affiliation created 1
PathwayCoordinates created 1
NegativeRegulation created 1
Regulation created 1
CandidateSet created 1
FragmentModification created 1
Depolymerisation created 1
EntityFunctionalStatus created 1
ReferenceDatabase created 1
FailedReaction created 1
PhysicalEntity created 1
Publication created 1
Complex created 1
GO_MolecularFunction created 1
ControlledVocabulary created 1
TranslationalModification created 1
IntraChainCrosslinkedResidue created 1
GroupModifiedResidue created 1
DefinedSet created 1
ReferenceRNASequence created 1
EntitySet created 1
Event created 1
LiteratureReference created 1
ConcurrentEventSet created 1
ExternalOntology created 1
PositiveRegulation created 1
ReferenceIsoform created 1
StableIdentifier created 1
ReactionlikeEvent created 1
CatalystActivity created 1
Summation created 1
_Deleted created 1
PathwayDiagram created 1
_AttributeValueBeforeChange created 1
_InstanceBeforeChange created 1
Polymer created 1
EntityWithAccessionedSequence created 1
InstanceEdit created 1
InterChainCrosslinkedResidue created 1
SimpleEntity created 1
GeneticallyModifiedResidue created 1
Taxon created 1
Vertex created 1
NegativeGeneExpressionRegulation created 1
_Release created 1
Regulation edited +
Pathway edited +
NegativeRegulation edited +
OtherEntity edited +
PositiveRegulation edited +
ReactionlikeEvent edited +
GenomeEncodedEntity edited +
Event edited +
OpenSet edited +
Requirement edited +
DefinedSet edited +
EntitySet edited +
Reaction edited +
NegativeGeneExpressionRegulation edited +
PhysicalEntity edited +
FailedReaction edited +
SimpleEntity edited +
Polymerisation edited +
Complex edited +
EntityWithAccessionedSequence edited +
Polymer edited +
Depolymerisation edited +
CandidateSet edited +
PositiveGeneExpressionRegulation edited +
BlackBoxEvent edited +
_InstanceBeforeChange instanceEdit 1
EntityWithAccessionedSequence revised +
Polymer revised +
Depolymerisation revised +
PositiveGeneExpressionRegulation revised +
BlackBoxEvent revised +
CandidateSet revised +
Reaction revised +
NegativeGeneExpressionRegulation revised +
Polymerisation revised +
Complex revised +
PhysicalEntity revised +
FailedReaction revised +
SimpleEntity revised +
OpenSet revised +
GenomeEncodedEntity revised +
Event revised +
EntitySet revised +
Requirement revised +
DefinedSet revised +
Pathway revised +
Regulation revised +
NegativeRegulation revised +
ReactionlikeEvent revised +
PositiveRegulation revised +
OtherEntity revised +
Depolymerisation reviewed +
Polymer reviewed +
EntityWithAccessionedSequence reviewed +
BlackBoxEvent reviewed +
PositiveGeneExpressionRegulation reviewed +
CandidateSet reviewed +
NegativeGeneExpressionRegulation reviewed +
Reaction reviewed +
Complex reviewed +
Polymerisation reviewed +
FailedReaction reviewed +
SimpleEntity reviewed +
PhysicalEntity reviewed +
OpenSet reviewed +
Event reviewed +
GenomeEncodedEntity reviewed +
Requirement reviewed +
DefinedSet reviewed +
EntitySet reviewed +
NegativeRegulation reviewed +
Regulation reviewed +
Pathway reviewed +
ReactionlikeEvent reviewed +
PositiveRegulation reviewed +
OtherEntity reviewed +
OpenSet authored 1
GenomeEncodedEntity authored 1
Event authored +
DefinedSet authored 1
Requirement authored 1
EntitySet authored 1
Regulation authored 1
Pathway authored +
NegativeRegulation authored 1
ReactionlikeEvent authored +
OtherEntity authored 1
PositiveRegulation authored 1
EntityWithAccessionedSequence authored 1
Depolymerisation authored +
Polymer authored 1
PositiveGeneExpressionRegulation authored 1
BlackBoxEvent authored +
CandidateSet authored 1
Reaction authored +
NegativeGeneExpressionRegulation authored 1
Polymerisation authored +
Complex authored 1
PhysicalEntity authored 1
FailedReaction authored +
SimpleEntity authored 1
ReactionCoordinates modified +
Person modified +
BlackBoxEvent modified +
ReferenceGroup modified +
DeletedControlledVocabulary modified +
Edge modified +
VertexSearchableTerm modified +
FragmentReplacedModification modified +
Reaction modified +
URL modified +
PsiMod modified +
SequenceOntology modified +
ModifiedResidue modified +
ReplacedResidue modified +
PathwayDiagramItem modified +
CrosslinkedResidue modified +
OpenSet modified +
OtherEntity modified +
FunctionalStatus modified +
FunctionalStatusType modified +
ReferenceMolecule modified +
FragmentDeletionModification modified +
ReferenceGeneProduct modified +
ReactionVertex modified +
PositiveGeneExpressionRegulation modified +
ReferenceEntity modified +
AbstractModifiedResidue modified +
FragmentInsertionModification modified +
Polymerisation modified +
EntityVertex modified +
GO_CellularComponent modified +
DatabaseObject modified +
Book modified +
FrontPage modified +
GO_BiologicalProcess modified +
ReferenceSequence modified +
EvidenceType modified +
GenomeEncodedEntity modified +
Species modified +
Figure modified +
ReferenceDNASequence modified +
Pathway modified +
FragmentModification modified +
CandidateSet modified +
ReferenceDatabase modified +
EntityFunctionalStatus modified +
Depolymerisation modified +
PhysicalEntity modified +
Publication modified +
FailedReaction modified +
Complex modified +
ControlledVocabulary modified +
GO_MolecularFunction modified +
TranslationalModification modified +
EntityCompartment modified +
PathwayVertex modified +
Requirement modified +
Compartment modified +
Disease modified +
Affiliation modified +
CellType modified +
DatabaseIdentifier modified +
PathwayCoordinates modified +
Regulation modified +
NegativeRegulation modified +
_Deleted modified +
Summation modified +
_InstanceBeforeChange modified +
PathwayDiagram modified +
_AttributeValueBeforeChange modified +
EntityWithAccessionedSequence modified +
InstanceEdit modified +
Polymer modified +
InterChainCrosslinkedResidue modified +
SimpleEntity modified +
Taxon modified +
GeneticallyModifiedResidue modified +
Vertex modified +
NegativeGeneExpressionRegulation modified +
_Release modified +
IntraChainCrosslinkedResidue modified +
DefinedSet modified +
ReferenceRNASequence modified +
EntitySet modified +
GroupModifiedResidue modified +
Event modified +
LiteratureReference modified +
ExternalOntology modified +
ConcurrentEventSet modified +
PositiveRegulation modified +
ReferenceIsoform modified +
StableIdentifier modified +
ReactionlikeEvent modified +
CatalystActivity modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.