Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
GenomeEncodedEntity created 1
ReferenceRNASequence created 1
GO_CellularComponent created 1
GroupModifiedResidue created 1
Complex created 1
ReferenceIsoform created 1
PhysicalEntity created 1
Depolymerisation created 1
Requirement created 1
Book created 1
_Deleted created 1
ModifiedResidue created 1
Vertex created 1
PathwayDiagramItem created 1
GO_MolecularFunction created 1
VertexSearchableTerm created 1
FragmentModification created 1
_InstanceBeforeChange created 1
ReferenceSequence created 1
CatalystActivity created 1
OtherEntity created 1
ReactionVertex created 1
TranslationalModification created 1
Regulation created 1
FunctionalStatusType created 1
PsiMod created 1
NegativeRegulation created 1
Disease created 1
OpenSet created 1
Edge created 1
_AttributeValueBeforeChange created 1
Polymerisation created 1
EntityWithAccessionedSequence created 1
IntraChainCrosslinkedResidue created 1
PathwayVertex created 1
PathwayDiagram created 1
EntityCompartment created 1
ReferenceMolecule created 1
Publication created 1
Polymer created 1
ExternalOntology created 1
FragmentReplacedModification created 1
GeneticallyModifiedResidue created 1
FragmentDeletionModification created 1
FunctionalStatus created 1
AbstractModifiedResidue created 1
ReferenceEntity created 1
EntityFunctionalStatus created 1
GO_BiologicalProcess created 1
StableIdentifier created 1
ReferenceGroup created 1
Event created 1
URL created 1
Reaction created 1
SequenceOntology created 1
ControlledVocabulary created 1
Affiliation created 1
EntityVertex created 1
NegativeGeneExpressionRegulation created 1
LiteratureReference created 1
Person created 1
Species created 1
InstanceEdit created 1
PositiveRegulation created 1
FailedReaction created 1
Pathway created 1
ReferenceGeneProduct created 1
ReplacedResidue created 1
FragmentInsertionModification created 1
EvidenceType created 1
ConcurrentEventSet created 1
Taxon created 1
EntitySet created 1
CandidateSet created 1
Summation created 1
DatabaseIdentifier created 1
Figure created 1
CrosslinkedResidue created 1
ReferenceDatabase created 1
Compartment created 1
ReferenceDNASequence created 1
FrontPage created 1
BlackBoxEvent created 1
ReactionlikeEvent created 1
PositiveGeneExpressionRegulation created 1
DefinedSet created 1
_Release created 1
DatabaseObject created 1
PathwayCoordinates created 1
ReactionCoordinates created 1
CellType created 1
DeletedControlledVocabulary created 1
SimpleEntity created 1
InterChainCrosslinkedResidue created 1
ReactionlikeEvent authored +
PositiveRegulation authored 1
Depolymerisation authored +
Requirement authored 1
Complex authored 1
EntityWithAccessionedSequence authored 1
PhysicalEntity authored 1
NegativeGeneExpressionRegulation authored 1
GenomeEncodedEntity authored 1
BlackBoxEvent authored +
Polymerisation authored +
Pathway authored +
PositiveGeneExpressionRegulation authored 1
Polymer authored 1
FailedReaction authored +
Regulation authored 1
EntitySet authored 1
OtherEntity authored 1
DefinedSet authored 1
Reaction authored +
Event authored +
SimpleEntity authored 1
NegativeRegulation authored 1
OpenSet authored 1
CandidateSet authored 1
CandidateSet edited +
NegativeRegulation edited +
OpenSet edited +
Event edited +
SimpleEntity edited +
Reaction edited +
DefinedSet edited +
OtherEntity edited +
Regulation edited +
EntitySet edited +
FailedReaction edited +
Polymer edited +
PositiveGeneExpressionRegulation edited +
Pathway edited +
GenomeEncodedEntity edited +
Polymerisation edited +
BlackBoxEvent edited +
EntityWithAccessionedSequence edited +
Complex edited +
PhysicalEntity edited +
NegativeGeneExpressionRegulation edited +
Depolymerisation edited +
Requirement edited +
PositiveRegulation edited +
ReactionlikeEvent edited +
Event revised +
SimpleEntity revised +
Reaction revised +
CandidateSet revised +
NegativeRegulation revised +
OpenSet revised +
OtherEntity revised +
Regulation revised +
EntitySet revised +
DefinedSet revised +
Polymer revised +
PositiveGeneExpressionRegulation revised +
Pathway revised +
FailedReaction revised +
Depolymerisation revised +
Requirement revised +
PositiveRegulation revised +
ReactionlikeEvent revised +
GenomeEncodedEntity revised +
Polymerisation revised +
BlackBoxEvent revised +
Complex revised +
EntityWithAccessionedSequence revised +
PhysicalEntity revised +
NegativeGeneExpressionRegulation revised +
PositiveGeneExpressionRegulation reviewed +
Pathway reviewed +
Polymer reviewed +
FailedReaction reviewed +
ReactionlikeEvent reviewed +
PositiveRegulation reviewed +
Depolymerisation reviewed +
Requirement reviewed +
EntityWithAccessionedSequence reviewed +
Complex reviewed +
PhysicalEntity reviewed +
NegativeGeneExpressionRegulation reviewed +
GenomeEncodedEntity reviewed +
Polymerisation reviewed +
BlackBoxEvent reviewed +
Reaction reviewed +
Event reviewed +
SimpleEntity reviewed +
NegativeRegulation reviewed +
OpenSet reviewed +
CandidateSet reviewed +
Regulation reviewed +
EntitySet reviewed +
OtherEntity reviewed +
DefinedSet reviewed +
_InstanceBeforeChange instanceEdit 1
DeletedControlledVocabulary modified +
SimpleEntity modified +
InterChainCrosslinkedResidue modified +
DefinedSet modified +
DatabaseObject modified +
_Release modified +
PathwayCoordinates modified +
CellType modified +
ReactionCoordinates modified +
PositiveGeneExpressionRegulation modified +
FrontPage modified +
BlackBoxEvent modified +
ReferenceDNASequence modified +
Compartment modified +
ReactionlikeEvent modified +
CandidateSet modified +
Summation modified +
Figure modified +
DatabaseIdentifier modified +
ReferenceDatabase modified +
CrosslinkedResidue modified +
ReferenceGeneProduct modified +
ReplacedResidue modified +
EvidenceType modified +
ConcurrentEventSet modified +
FragmentInsertionModification modified +
EntitySet modified +
Taxon modified +
FailedReaction modified +
Pathway modified +
ControlledVocabulary modified +
Affiliation modified +
NegativeGeneExpressionRegulation modified +
EntityVertex modified +
LiteratureReference modified +
Person modified +
Species modified +
InstanceEdit modified +
PositiveRegulation modified +
StableIdentifier modified +
GO_BiologicalProcess modified +
ReferenceEntity modified +
EntityFunctionalStatus modified +
Event modified +
ReferenceGroup modified +
Reaction modified +
SequenceOntology modified +
URL modified +
FragmentReplacedModification modified +
GeneticallyModifiedResidue modified +
FragmentDeletionModification modified +
FunctionalStatus modified +
AbstractModifiedResidue modified +
ReferenceMolecule modified +
Publication modified +
Polymer modified +
ExternalOntology modified +
Polymerisation modified +
PathwayVertex modified +
IntraChainCrosslinkedResidue modified +
EntityWithAccessionedSequence modified +
PathwayDiagram modified +
EntityCompartment modified +
PsiMod modified +
FunctionalStatusType modified +
OpenSet modified +
Disease modified +
NegativeRegulation modified +
_AttributeValueBeforeChange modified +
Edge modified +
_InstanceBeforeChange modified +
CatalystActivity modified +
ReferenceSequence modified +
OtherEntity modified +
ReactionVertex modified +
Regulation modified +
TranslationalModification modified +
Vertex modified +
PathwayDiagramItem modified +
VertexSearchableTerm modified +
GO_MolecularFunction modified +
FragmentModification modified +
GroupModifiedResidue modified +
GO_CellularComponent modified +
ReferenceRNASequence modified +
GenomeEncodedEntity modified +
PhysicalEntity modified +
ReferenceIsoform modified +
Complex modified +
Requirement modified +
Depolymerisation modified +
_Deleted modified +
Book modified +
ModifiedResidue modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.