Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Requirement edited +
ReactionlikeEvent edited +
NegativeRegulation edited +
OtherEntity edited +
Complex edited +
NegativeGeneExpressionRegulation edited +
FailedReaction edited +
Depolymerisation edited +
PositiveGeneExpressionRegulation edited +
GenomeEncodedEntity edited +
BlackBoxEvent edited +
Regulation edited +
Event edited +
Pathway edited +
PositiveRegulation edited +
EntityWithAccessionedSequence edited +
CandidateSet edited +
PhysicalEntity edited +
Polymer edited +
DefinedSet edited +
Polymerisation edited +
OpenSet edited +
SimpleEntity edited +
Reaction edited +
EntitySet edited +
FailedReaction created 1
Pathway created 1
BlackBoxEvent created 1
FragmentReplacedModification created 1
GeneticallyModifiedResidue created 1
CandidateSet created 1
_Deleted created 1
SimpleEntity created 1
EvidenceType created 1
PathwayVertex created 1
Publication created 1
ReferenceMolecule created 1
StableIdentifier created 1
EntitySet created 1
PathwayCoordinates created 1
Compartment created 1
ReferenceGroup created 1
NegativeRegulation created 1
ReactionlikeEvent created 1
OtherEntity created 1
FragmentInsertionModification created 1
ModifiedResidue created 1
DatabaseIdentifier created 1
Complex created 1
IntraChainCrosslinkedResidue created 1
GO_BiologicalProcess created 1
Species created 1
CatalystActivity created 1
SequenceOntology created 1
Depolymerisation created 1
ControlledVocabulary created 1
FrontPage created 1
Regulation created 1
GenomeEncodedEntity created 1
ReferenceSequence created 1
ReferenceGeneProduct created 1
ReplacedResidue created 1
EntityWithAccessionedSequence created 1
PhysicalEntity created 1
FunctionalStatus created 1
Edge created 1
ReferenceDatabase created 1
CrosslinkedResidue created 1
GroupModifiedResidue created 1
Person created 1
PositiveGeneExpressionRegulation created 1
ReactionVertex created 1
Vertex created 1
CellType created 1
EntityVertex created 1
Taxon created 1
ExternalOntology created 1
Polymerisation created 1
DefinedSet created 1
EntityFunctionalStatus created 1
VertexSearchableTerm created 1
PathwayDiagram created 1
InstanceEdit created 1
ReferenceRNASequence created 1
InterChainCrosslinkedResidue created 1
Requirement created 1
GO_CellularComponent created 1
FragmentModification created 1
FragmentDeletionModification created 1
ReactionCoordinates created 1
GO_MolecularFunction created 1
Affiliation created 1
_AttributeValueBeforeChange created 1
Event created 1
Disease created 1
PositiveRegulation created 1
EntityCompartment created 1
URL created 1
Book created 1
PsiMod created 1
Polymer created 1
Summation created 1
DeletedControlledVocabulary created 1
ConcurrentEventSet created 1
Reaction created 1
_Release created 1
OpenSet created 1
LiteratureReference created 1
TranslationalModification created 1
FunctionalStatusType created 1
PathwayDiagramItem created 1
ReferenceEntity created 1
DatabaseObject created 1
Figure created 1
ReferenceIsoform created 1
_InstanceBeforeChange created 1
AbstractModifiedResidue created 1
NegativeGeneExpressionRegulation created 1
ReferenceDNASequence created 1
_InstanceBeforeChange instanceEdit 1
Requirement authored 1
ReactionlikeEvent authored +
NegativeRegulation authored 1
OtherEntity authored 1
Complex authored 1
NegativeGeneExpressionRegulation authored 1
FailedReaction authored +
PositiveGeneExpressionRegulation authored 1
Depolymerisation authored +
BlackBoxEvent authored +
Regulation authored 1
GenomeEncodedEntity authored 1
Event authored +
Pathway authored +
PositiveRegulation authored 1
EntityWithAccessionedSequence authored 1
CandidateSet authored 1
PhysicalEntity authored 1
Polymer authored 1
DefinedSet authored 1
Polymerisation authored +
OpenSet authored 1
SimpleEntity authored 1
Reaction authored +
EntitySet authored 1
NegativeGeneExpressionRegulation reviewed +
Complex reviewed +
OtherEntity reviewed +
NegativeRegulation reviewed +
ReactionlikeEvent reviewed +
Requirement reviewed +
EntitySet reviewed +
Reaction reviewed +
SimpleEntity reviewed +
DefinedSet reviewed +
Polymerisation reviewed +
OpenSet reviewed +
Polymer reviewed +
PhysicalEntity reviewed +
CandidateSet reviewed +
EntityWithAccessionedSequence reviewed +
PositiveRegulation reviewed +
Event reviewed +
Pathway reviewed +
BlackBoxEvent reviewed +
Regulation reviewed +
GenomeEncodedEntity reviewed +
Depolymerisation reviewed +
PositiveGeneExpressionRegulation reviewed +
FailedReaction reviewed +
NegativeGeneExpressionRegulation revised +
Complex revised +
Requirement revised +
OtherEntity revised +
NegativeRegulation revised +
ReactionlikeEvent revised +
SimpleEntity revised +
Reaction revised +
DefinedSet revised +
OpenSet revised +
Polymerisation revised +
Polymer revised +
PhysicalEntity revised +
EntitySet revised +
Event revised +
Pathway revised +
BlackBoxEvent revised +
GenomeEncodedEntity revised +
Regulation revised +
Depolymerisation revised +
PositiveGeneExpressionRegulation revised +
FailedReaction revised +
CandidateSet revised +
EntityWithAccessionedSequence revised +
PositiveRegulation revised +
Affiliation modified +
Disease modified +
Event modified +
_AttributeValueBeforeChange modified +
EntityCompartment modified +
PositiveRegulation modified +
URL modified +
Book modified +
Summation modified +
DeletedControlledVocabulary modified +
Polymer modified +
PsiMod modified +
OpenSet modified +
LiteratureReference modified +
_Release modified +
ConcurrentEventSet modified +
Reaction modified +
FunctionalStatusType modified +
PathwayDiagramItem modified +
TranslationalModification modified +
DatabaseObject modified +
ReferenceEntity modified +
Figure modified +
AbstractModifiedResidue modified +
ReferenceIsoform modified +
_InstanceBeforeChange modified +
ReferenceDNASequence modified +
NegativeGeneExpressionRegulation modified +
PositiveGeneExpressionRegulation modified +
Person modified +
ReactionVertex modified +
Vertex modified +
CellType modified +
Taxon modified +
EntityVertex modified +
Polymerisation modified +
DefinedSet modified +
ExternalOntology modified +
VertexSearchableTerm modified +
EntityFunctionalStatus modified +
PathwayDiagram modified +
InstanceEdit modified +
InterChainCrosslinkedResidue modified +
ReferenceRNASequence modified +
GO_CellularComponent modified +
Requirement modified +
FragmentModification modified +
FragmentDeletionModification modified +
GO_MolecularFunction modified +
ReactionCoordinates modified +
FrontPage modified +
Depolymerisation modified +
ControlledVocabulary modified +
Regulation modified +
GenomeEncodedEntity modified +
ReferenceSequence modified +
ReferenceGeneProduct modified +
EntityWithAccessionedSequence modified +
ReplacedResidue modified +
PhysicalEntity modified +
FunctionalStatus modified +
ReferenceDatabase modified +
CrosslinkedResidue modified +
Edge modified +
GroupModifiedResidue modified +
FailedReaction modified +
FragmentReplacedModification modified +
BlackBoxEvent modified +
Pathway modified +
GeneticallyModifiedResidue modified +
CandidateSet modified +
_Deleted modified +
PathwayVertex modified +
EvidenceType modified +
SimpleEntity modified +
StableIdentifier modified +
ReferenceMolecule modified +
Publication modified +
EntitySet modified +
Compartment modified +
PathwayCoordinates modified +
ReferenceGroup modified +
ReactionlikeEvent modified +
NegativeRegulation modified +
OtherEntity modified +
Complex modified +
FragmentInsertionModification modified +
DatabaseIdentifier modified +
ModifiedResidue modified +
IntraChainCrosslinkedResidue modified +
GO_BiologicalProcess modified +
Species modified +
SequenceOntology modified +
CatalystActivity modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.