Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Complex authored 1
CandidateSet authored 1
Requirement authored 1
PhysicalEntity authored 1
GenomeEncodedEntity authored 1
EntitySet authored 1
ReactionlikeEvent authored +
Depolymerisation authored +
PositiveGeneExpressionRegulation authored 1
Polymerisation authored +
PositiveRegulation authored 1
OpenSet authored 1
NegativeGeneExpressionRegulation authored 1
BlackBoxEvent authored +
EntityWithAccessionedSequence authored 1
Pathway authored +
FailedReaction authored +
NegativeRegulation authored 1
OtherEntity authored 1
SimpleEntity authored 1
Regulation authored 1
Reaction authored +
DefinedSet authored 1
Polymer authored 1
Event authored +
_InstanceBeforeChange instanceEdit 1
GenomeEncodedEntity modified +
OpenSet modified +
SequenceOntology modified +
PathwayVertex modified +
Affiliation modified +
BlackBoxEvent modified +
FragmentModification modified +
TranslationalModification modified +
Publication modified +
_Release modified +
PsiMod modified +
URL modified +
Vertex modified +
Reaction modified +
CrosslinkedResidue modified +
GO_MolecularFunction modified +
Requirement modified +
Complex modified +
Taxon modified +
_Deleted modified +
InstanceEdit modified +
ConcurrentEventSet modified +
ReactionlikeEvent modified +
VertexSearchableTerm modified +
PositiveGeneExpressionRegulation modified +
GeneticallyModifiedResidue modified +
DeletedControlledVocabulary modified +
GroupModifiedResidue modified +
EntityCompartment modified +
ControlledVocabulary modified +
PositiveRegulation modified +
FrontPage modified +
OtherEntity modified +
EntityFunctionalStatus modified +
SimpleEntity modified +
FailedReaction modified +
ReferenceRNASequence modified +
Figure modified +
PathwayDiagram modified +
DefinedSet modified +
ReplacedResidue modified +
Edge modified +
PathwayDiagramItem modified +
DatabaseObject modified +
_AttributeValueBeforeChange modified +
InterChainCrosslinkedResidue modified +
PhysicalEntity modified +
FunctionalStatusType modified +
FunctionalStatus modified +
EntitySet modified +
Depolymerisation modified +
ReactionVertex modified +
DatabaseIdentifier modified +
Book modified +
PathwayCoordinates modified +
StableIdentifier modified +
Polymerisation modified +
FragmentReplacedModification modified +
EntityWithAccessionedSequence modified +
Pathway modified +
ReactionCoordinates modified +
NegativeRegulation modified +
ModifiedResidue modified +
CatalystActivity modified +
Summation modified +
Disease modified +
EntityVertex modified +
FragmentDeletionModification modified +
FragmentInsertionModification modified +
EvidenceType modified +
Event modified +
_InstanceBeforeChange modified +
CandidateSet modified +
ReferenceSequence modified +
ReferenceMolecule modified +
LiteratureReference modified +
ReferenceDatabase modified +
CellType modified +
Person modified +
ReferenceDNASequence modified +
Species modified +
ReferenceEntity modified +
ExternalOntology modified +
NegativeGeneExpressionRegulation modified +
ReferenceGroup modified +
Polymer modified +
AbstractModifiedResidue modified +
Compartment modified +
IntraChainCrosslinkedResidue modified +
ReferenceIsoform modified +
Regulation modified +
GO_BiologicalProcess modified +
ReferenceGeneProduct modified +
GO_CellularComponent modified +
EntityWithAccessionedSequence reviewed +
Pathway reviewed +
NegativeGeneExpressionRegulation reviewed +
BlackBoxEvent reviewed +
OtherEntity reviewed +
NegativeRegulation reviewed +
SimpleEntity reviewed +
FailedReaction reviewed +
Polymer reviewed +
Regulation reviewed +
DefinedSet reviewed +
Reaction reviewed +
Event reviewed +
PhysicalEntity reviewed +
Requirement reviewed +
CandidateSet reviewed +
Complex reviewed +
EntitySet reviewed +
GenomeEncodedEntity reviewed +
Depolymerisation reviewed +
ReactionlikeEvent reviewed +
PositiveGeneExpressionRegulation reviewed +
PositiveRegulation reviewed +
OpenSet reviewed +
Polymerisation reviewed +
PositiveRegulation created 1
GeneticallyModifiedResidue created 1
PositiveGeneExpressionRegulation created 1
VertexSearchableTerm created 1
ControlledVocabulary created 1
GroupModifiedResidue created 1
DeletedControlledVocabulary created 1
EntityCompartment created 1
Taxon created 1
ReactionlikeEvent created 1
ConcurrentEventSet created 1
_Deleted created 1
InstanceEdit created 1
Requirement created 1
Complex created 1
PathwayDiagramItem created 1
Edge created 1
ReplacedResidue created 1
DefinedSet created 1
PathwayDiagram created 1
SimpleEntity created 1
OtherEntity created 1
EntityFunctionalStatus created 1
ReferenceRNASequence created 1
Figure created 1
FailedReaction created 1
FrontPage created 1
OpenSet created 1
GenomeEncodedEntity created 1
CrosslinkedResidue created 1
GO_MolecularFunction created 1
URL created 1
_Release created 1
PsiMod created 1
Reaction created 1
Vertex created 1
FragmentModification created 1
Publication created 1
TranslationalModification created 1
PathwayVertex created 1
SequenceOntology created 1
BlackBoxEvent created 1
Affiliation created 1
ReferenceDNASequence created 1
Person created 1
Species created 1
ReferenceEntity created 1
ReferenceDatabase created 1
CellType created 1
ReferenceMolecule created 1
LiteratureReference created 1
ReferenceSequence created 1
CandidateSet created 1
GO_CellularComponent created 1
ReferenceGeneProduct created 1
Compartment created 1
Polymer created 1
AbstractModifiedResidue created 1
GO_BiologicalProcess created 1
IntraChainCrosslinkedResidue created 1
Regulation created 1
ReferenceIsoform created 1
ReferenceGroup created 1
ExternalOntology created 1
NegativeGeneExpressionRegulation created 1
PathwayCoordinates created 1
StableIdentifier created 1
FragmentReplacedModification created 1
Polymerisation created 1
ReactionVertex created 1
Book created 1
DatabaseIdentifier created 1
FunctionalStatus created 1
FunctionalStatusType created 1
Depolymerisation created 1
EntitySet created 1
InterChainCrosslinkedResidue created 1
_AttributeValueBeforeChange created 1
PhysicalEntity created 1
DatabaseObject created 1
EvidenceType created 1
Event created 1
FragmentInsertionModification created 1
_InstanceBeforeChange created 1
FragmentDeletionModification created 1
EntityVertex created 1
CatalystActivity created 1
ModifiedResidue created 1
NegativeRegulation created 1
Disease created 1
Summation created 1
Pathway created 1
EntityWithAccessionedSequence created 1
ReactionCoordinates created 1
OpenSet revised +
PositiveRegulation revised +
Polymerisation revised +
PositiveGeneExpressionRegulation revised +
GenomeEncodedEntity revised +
EntitySet revised +
ReactionlikeEvent revised +
Depolymerisation revised +
Requirement revised +
PhysicalEntity revised +
Complex revised +
CandidateSet revised +
Event revised +
Polymer revised +
Regulation revised +
DefinedSet revised +
Reaction revised +
OtherEntity revised +
NegativeRegulation revised +
SimpleEntity revised +
FailedReaction revised +
EntityWithAccessionedSequence revised +
Pathway revised +
NegativeGeneExpressionRegulation revised +
BlackBoxEvent revised +
NegativeGeneExpressionRegulation edited +
BlackBoxEvent edited +
EntityWithAccessionedSequence edited +
Pathway edited +
FailedReaction edited +
OtherEntity edited +
NegativeRegulation edited +
SimpleEntity edited +
Regulation edited +
DefinedSet edited +
Reaction edited +
Polymer edited +
Event edited +
Complex edited +
CandidateSet edited +
Requirement edited +
PhysicalEntity edited +
EntitySet edited +
GenomeEncodedEntity edited +
Depolymerisation edited +
ReactionlikeEvent edited +
PositiveGeneExpressionRegulation edited +
Polymerisation edited +
PositiveRegulation edited +
OpenSet edited +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.