Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
_InstanceBeforeChange instanceEdit 1
PositiveRegulation revised +
ReactionlikeEvent revised +
GenomeEncodedEntity revised +
DefinedSet revised +
Event revised +
Polymerisation revised +
OtherEntity revised +
PhysicalEntity revised +
SimpleEntity revised +
PositiveGeneExpressionRegulation revised +
BlackBoxEvent revised +
NegativeGeneExpressionRegulation revised +
EntityWithAccessionedSequence revised +
Complex revised +
Polymer revised +
CandidateSet revised +
Depolymerisation revised +
NegativeRegulation revised +
EntitySet revised +
Requirement revised +
Regulation revised +
OpenSet revised +
Reaction revised +
FailedReaction revised +
Pathway revised +
FragmentModification created 1
Affiliation created 1
ReplacedResidue created 1
BlackBoxEvent created 1
PsiMod created 1
GroupModifiedResidue created 1
GO_BiologicalProcess created 1
Event created 1
ReferenceDatabase created 1
PhysicalEntity created 1
SequenceOntology created 1
FragmentDeletionModification created 1
FailedReaction created 1
ReactionVertex created 1
Vertex created 1
InterChainCrosslinkedResidue created 1
_InstanceBeforeChange created 1
Book created 1
Reaction created 1
DeletedControlledVocabulary created 1
TranslationalModification created 1
Requirement created 1
CellType created 1
Polymer created 1
Person created 1
FragmentReplacedModification created 1
Edge created 1
EntityFunctionalStatus created 1
ExternalOntology created 1
ReferenceDNASequence created 1
Taxon created 1
ReferenceMolecule created 1
ReferenceSequence created 1
PathwayDiagram created 1
ControlledVocabulary created 1
AbstractModifiedResidue created 1
StableIdentifier created 1
GenomeEncodedEntity created 1
GO_CellularComponent created 1
_Deleted created 1
GO_MolecularFunction created 1
FrontPage created 1
Species created 1
CatalystActivity created 1
Disease created 1
ReferenceEntity created 1
Depolymerisation created 1
FunctionalStatus created 1
DatabaseIdentifier created 1
EntityWithAccessionedSequence created 1
PathwayVertex created 1
ConcurrentEventSet created 1
Polymerisation created 1
OtherEntity created 1
PositiveRegulation created 1
ReactionlikeEvent created 1
FunctionalStatusType created 1
ReactionCoordinates created 1
ReferenceGeneProduct created 1
EvidenceType created 1
Regulation created 1
ReferenceGroup created 1
OpenSet created 1
ReferenceIsoform created 1
Publication created 1
EntityCompartment created 1
VertexSearchableTerm created 1
FragmentInsertionModification created 1
Complex created 1
_AttributeValueBeforeChange created 1
CandidateSet created 1
DatabaseObject created 1
NegativeRegulation created 1
NegativeGeneExpressionRegulation created 1
GeneticallyModifiedResidue created 1
PathwayDiagramItem created 1
_Release created 1
Compartment created 1
PositiveGeneExpressionRegulation created 1
SimpleEntity created 1
ModifiedResidue created 1
EntityVertex created 1
DefinedSet created 1
Summation created 1
Figure created 1
Pathway created 1
URL created 1
CrosslinkedResidue created 1
PathwayCoordinates created 1
LiteratureReference created 1
EntitySet created 1
ReferenceRNASequence created 1
IntraChainCrosslinkedResidue created 1
InstanceEdit created 1
Depolymerisation authored +
Polymer authored 1
CandidateSet authored 1
Complex authored 1
NegativeRegulation authored 1
EntitySet authored 1
Requirement authored 1
Regulation authored 1
OpenSet authored 1
Reaction authored +
FailedReaction authored +
Pathway authored +
PositiveRegulation authored 1
ReactionlikeEvent authored +
GenomeEncodedEntity authored 1
DefinedSet authored 1
Event authored +
Polymerisation authored +
PhysicalEntity authored 1
OtherEntity authored 1
PositiveGeneExpressionRegulation authored 1
SimpleEntity authored 1
BlackBoxEvent authored +
NegativeGeneExpressionRegulation authored 1
EntityWithAccessionedSequence authored 1
Requirement edited +
EntitySet edited +
Depolymerisation edited +
Polymer edited +
CandidateSet edited +
Complex edited +
NegativeRegulation edited +
FailedReaction edited +
Pathway edited +
Regulation edited +
OpenSet edited +
Reaction edited +
DefinedSet edited +
Event edited +
Polymerisation edited +
OtherEntity edited +
PhysicalEntity edited +
PositiveRegulation edited +
ReactionlikeEvent edited +
GenomeEncodedEntity edited +
NegativeGeneExpressionRegulation edited +
EntityWithAccessionedSequence edited +
SimpleEntity edited +
PositiveGeneExpressionRegulation edited +
BlackBoxEvent edited +
Reaction reviewed +
OpenSet reviewed +
Regulation reviewed +
Pathway reviewed +
FailedReaction reviewed +
NegativeRegulation reviewed +
Polymer reviewed +
Depolymerisation reviewed +
CandidateSet reviewed +
Complex reviewed +
Requirement reviewed +
EntitySet reviewed +
BlackBoxEvent reviewed +
SimpleEntity reviewed +
PositiveGeneExpressionRegulation reviewed +
EntityWithAccessionedSequence reviewed +
NegativeGeneExpressionRegulation reviewed +
GenomeEncodedEntity reviewed +
ReactionlikeEvent reviewed +
PositiveRegulation reviewed +
PhysicalEntity reviewed +
OtherEntity reviewed +
Polymerisation reviewed +
Event reviewed +
DefinedSet reviewed +
DefinedSet modified +
Summation modified +
Compartment modified +
SimpleEntity modified +
ModifiedResidue modified +
PositiveGeneExpressionRegulation modified +
EntityVertex modified +
NegativeGeneExpressionRegulation modified +
GeneticallyModifiedResidue modified +
_Release modified +
PathwayDiagramItem modified +
ReferenceRNASequence modified +
InstanceEdit modified +
IntraChainCrosslinkedResidue modified +
CrosslinkedResidue modified +
LiteratureReference modified +
EntitySet modified +
PathwayCoordinates modified +
URL modified +
Figure modified +
Pathway modified +
PositiveRegulation modified +
ReactionlikeEvent modified +
FunctionalStatusType modified +
ReactionCoordinates modified +
ReferenceGeneProduct modified +
EvidenceType modified +
Polymerisation modified +
OtherEntity modified +
ConcurrentEventSet modified +
PathwayVertex modified +
FunctionalStatus modified +
DatabaseIdentifier modified +
EntityWithAccessionedSequence modified +
Complex modified +
_AttributeValueBeforeChange modified +
CandidateSet modified +
DatabaseObject modified +
NegativeRegulation modified +
ReferenceIsoform modified +
Publication modified +
EntityCompartment modified +
VertexSearchableTerm modified +
FragmentInsertionModification modified +
ReferenceGroup modified +
Regulation modified +
OpenSet modified +
ReferenceSequence modified +
PathwayDiagram modified +
ControlledVocabulary modified +
AbstractModifiedResidue modified +
StableIdentifier modified +
GenomeEncodedEntity modified +
Taxon modified +
ReferenceDNASequence modified +
ReferenceMolecule modified +
EntityFunctionalStatus modified +
ExternalOntology modified +
FragmentReplacedModification modified +
Edge modified +
Depolymerisation modified +
FrontPage modified +
Species modified +
Disease modified +
CatalystActivity modified +
ReferenceEntity modified +
GO_MolecularFunction modified +
_Deleted modified +
GO_CellularComponent modified +
SequenceOntology modified +
FragmentDeletionModification modified +
PsiMod modified +
GO_BiologicalProcess modified +
GroupModifiedResidue modified +
Event modified +
ReferenceDatabase modified +
PhysicalEntity modified +
ReplacedResidue modified +
BlackBoxEvent modified +
FragmentModification modified +
Affiliation modified +
Polymer modified +
Person modified +
DeletedControlledVocabulary modified +
TranslationalModification modified +
Requirement modified +
CellType modified +
_InstanceBeforeChange modified +
Book modified +
Reaction modified +
FailedReaction modified +
ReactionVertex modified +
Vertex modified +
InterChainCrosslinkedResidue modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.