Reactome: A Curated Pathway Database

Attributes of class 'EntityWithAccessionedSequence'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
endCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasModifiedResidue + INSTANCE AbstractModifiedResidue EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
referenceEntity 1 INSTANCE ReferenceSequence EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
startCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntityWithAccessionedSequence' instances

Class name Attribute name Cardinality
CandidateSet inferredFrom +
GenomeEncodedEntity inferredFrom +
SimpleEntity inferredFrom +
Polymer inferredFrom +
OtherEntity inferredFrom +
OpenSet inferredFrom +
PhysicalEntity inferredFrom +
EntitySet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Complex inferredFrom +
DefinedSet inferredFrom +
CandidateSet hasCandidate +
Complex hasComponent +
Polymer repeatedUnit +
PositiveRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
VertexSearchableTerm termProvider +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
Depolymerisation input +
Reaction input +
FailedReaction input +
BlackBoxEvent input +
Polymerisation input +
ReactionlikeEvent input +
DefinedSet hasMember +
EntitySet hasMember +
OpenSet hasMember +
CandidateSet hasMember +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
Complex entityOnOtherCell +
FailedReaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
GenomeEncodedEntity inferredTo +
CandidateSet inferredTo +
SimpleEntity inferredTo +
Polymer inferredTo +
EntitySet inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
DefinedSet inferredTo +
OtherEntity inferredTo +
OpenSet inferredTo +
PhysicalEntity inferredTo +
Reaction requiredInputComponent +
Depolymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
EntityVertex representedInstance 1
NegativeRegulation regulator 1
Regulation regulator 1
PositiveRegulation regulator 1
Requirement regulator 1
ConcurrentEventSet focusEntity +
_Deleted replacementInstances +
Polymerisation output +
BlackBoxEvent output +
ReactionlikeEvent output +
FailedReaction output +
Reaction output +
Depolymerisation output +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.