Reactome: A Curated Pathway Database

Attributes of class 'EntityCompartment'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
accession 1 TEXT N/A GO_CellularComponent ANY TEXT
componentOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
definition 1 TEXT N/A GO_CellularComponent   TEXT
hasPart + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
instanceOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A GO_CellularComponent   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase GO_CellularComponent   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'EntityCompartment' instances

Class name Attribute name Cardinality
GO_CellularComponent instanceOf +
Compartment instanceOf +
EntityCompartment instanceOf +
SimpleEntity compartment +
FailedReaction compartment +
Event compartment +
PhysicalEntity compartment +
Drug compartment +
Polymerisation compartment +
Polymer compartment +
DefinedSet compartment +
Depolymerisation compartment +
OtherEntity compartment +
BlackBoxEvent compartment +
EntitySet compartment +
ProteinDrug compartment +
Complex compartment +
GenomeEncodedEntity compartment +
Pathway compartment +
Reaction compartment +
ReactionlikeEvent compartment +
OpenSet compartment +
ChemicalDrug compartment +
EntityWithAccessionedSequence compartment +
CandidateSet compartment +
RNADrug compartment +
EntityCompartment componentOf +
Compartment componentOf +
GO_CellularComponent componentOf +
Complex includedLocation +
Compartment hasPart +
EntityCompartment hasPart +
GO_CellularComponent hasPart +
GenomeEncodedEntity goCellularComponent 1
Complex goCellularComponent 1
SimpleEntity goCellularComponent 1
ProteinDrug goCellularComponent 1
OtherEntity goCellularComponent 1
EntitySet goCellularComponent 1
CandidateSet goCellularComponent 1
DefinedSet goCellularComponent 1
RNADrug goCellularComponent 1
Polymer goCellularComponent 1
EntityWithAccessionedSequence goCellularComponent 1
Drug goCellularComponent 1
ChemicalDrug goCellularComponent 1
PhysicalEntity goCellularComponent 1
OpenSet goCellularComponent 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.