Reactome: A Curated Pathway Database

Attributes of class 'EntityCompartment'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
accession 1 TEXT N/A GO_CellularComponent ANY TEXT
componentOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
definition 1 TEXT N/A GO_CellularComponent   TEXT
hasPart + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
instanceOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A GO_CellularComponent   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase GO_CellularComponent   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'EntityCompartment' instances

Class name Attribute name Cardinality
EntityCompartment componentOf +
Compartment componentOf +
GO_CellularComponent componentOf +
EntityCompartment instanceOf +
Compartment instanceOf +
GO_CellularComponent instanceOf +
Complex includedLocation +
CandidateSet goCellularComponent 1
EntityWithAccessionedSequence goCellularComponent 1
SimpleEntity goCellularComponent 1
Complex goCellularComponent 1
DefinedSet goCellularComponent 1
Polymer goCellularComponent 1
OtherEntity goCellularComponent 1
EntitySet goCellularComponent 1
OpenSet goCellularComponent 1
PhysicalEntity goCellularComponent 1
GenomeEncodedEntity goCellularComponent 1
EntityCompartment hasPart +
GO_CellularComponent hasPart +
Compartment hasPart +
EntitySet compartment +
OtherEntity compartment +
Event compartment +
BlackBoxEvent compartment +
GenomeEncodedEntity compartment +
Pathway compartment +
PhysicalEntity compartment +
FailedReaction compartment +
CandidateSet compartment +
ReactionlikeEvent compartment +
Reaction compartment +
Polymerisation compartment +
Polymer compartment +
OpenSet compartment +
EntityWithAccessionedSequence compartment +
Complex compartment +
SimpleEntity compartment +
DefinedSet compartment +
Depolymerisation compartment +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.