Reactome: A Curated Pathway Database

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
Requirement regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
PositiveRegulation regulator 1
VertexSearchableTerm termProvider +
InterChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
IntraChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
Regulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
PositiveRegulation activeUnit +
CatalystActivity activeUnit +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
Polymer repeatedUnit +
EntityVertex representedInstance 1
GenomeEncodedEntity inferredTo +
DefinedSet inferredTo +
PhysicalEntity inferredTo +
SimpleEntity inferredTo +
EntitySet inferredTo +
Polymer inferredTo +
OpenSet inferredTo +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
Complex inferredTo +
OtherEntity inferredTo +
Reaction requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Complex entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex hasComponent +
CandidateSet hasCandidate +
_Deleted replacementInstances +
BlackBoxEvent input +
FailedReaction input +
ReactionlikeEvent input +
Polymerisation input +
Depolymerisation input +
Reaction input +
CandidateSet hasMember +
OpenSet hasMember +
DefinedSet hasMember +
EntitySet hasMember +
SimpleEntity inferredFrom +
EntitySet inferredFrom +
PhysicalEntity inferredFrom +
Polymer inferredFrom +
DefinedSet inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
OtherEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OpenSet inferredFrom +
CandidateSet inferredFrom +
ConcurrentEventSet focusEntity +
BlackBoxEvent output +
FailedReaction output +
ReactionlikeEvent output +
Polymerisation output +
Depolymerisation output +
Reaction output +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.