Reactome: A Curated Pathway Database

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymer repeatedUnit +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
OpenSet hasMember +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
ConcurrentEventSet focusEntity +
_Deleted replacementInstances +
InterChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
GroupModifiedResidue modification 1
IntraChainCrosslinkedResidue modification 1
VertexSearchableTerm termProvider +
EntityVertex representedInstance 1
PhysicalEntity inferredTo +
CandidateSet inferredTo +
EntitySet inferredTo +
OtherEntity inferredTo +
DefinedSet inferredTo +
SimpleEntity inferredTo +
Polymer inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
OpenSet inferredTo +
GenomeEncodedEntity inferredTo +
PositiveGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
Regulation activeUnit +
EntityWithAccessionedSequence inferredFrom +
OpenSet inferredFrom +
GenomeEncodedEntity inferredFrom +
EntitySet inferredFrom +
OtherEntity inferredFrom +
DefinedSet inferredFrom +
Polymer inferredFrom +
SimpleEntity inferredFrom +
Complex inferredFrom +
PhysicalEntity inferredFrom +
CandidateSet inferredFrom +
FailedReaction entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Complex entityOnOtherCell +
Depolymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent output +
Depolymerisation output +
Polymerisation output +
BlackBoxEvent output +
FailedReaction output +
Reaction output +
CandidateSet hasCandidate +
BlackBoxEvent input +
Reaction input +
FailedReaction input +
ReactionlikeEvent input +
Depolymerisation input +
Polymerisation input +
Regulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Complex hasComponent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.