Reactome: A Curated Pathway Database

Attributes of class 'CandidateSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
__is_ghost 1 OTHER N/A DatabaseObject   ENUM('TRUE')
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasCandidate + INSTANCE PhysicalEntity CandidateSet ALL INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'CandidateSet' instances

Class name Attribute name Cardinality
CandidateSet hasMember +
EntitySet hasMember +
DefinedSet hasMember +
OpenSet hasMember +
_Deleted replacementInstances +
Depolymerisation output +
Reaction output +
FailedReaction output +
BlackBoxEvent output +
Polymerisation output +
ReactionlikeEvent output +
IntraChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
GroupModifiedResidue modification 1
InterChainCrosslinkedResidue modification 1
Polymerisation input +
ReactionlikeEvent input +
Reaction input +
Depolymerisation input +
FailedReaction input +
BlackBoxEvent input +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
EntityVertex representedInstance 1
Complex hasComponent +
Polymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
CatalystActivity activeUnit +
PositiveRegulation activeUnit +
Requirement activeUnit +
NegativeRegulation activeUnit +
Regulation activeUnit +
OtherEntity inferredFrom +
PhysicalEntity inferredFrom +
CandidateSet inferredFrom +
DefinedSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OpenSet inferredFrom +
Polymer inferredFrom +
GenomeEncodedEntity inferredFrom +
SimpleEntity inferredFrom +
EntitySet inferredFrom +
Complex inferredFrom +
CandidateSet hasCandidate +
ConcurrentEventSet focusEntity +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
Complex inferredTo +
EntitySet inferredTo +
PhysicalEntity inferredTo +
OtherEntity inferredTo +
DefinedSet inferredTo +
EntityWithAccessionedSequence inferredTo +
Polymer inferredTo +
OpenSet inferredTo +
CandidateSet inferredTo +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Requirement regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
PositiveRegulation regulator 1
Polymer repeatedUnit +
VertexSearchableTerm termProvider +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.